RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 KRTAP2-3P0C7H8 128 aa3.53□□□□□ -1.85
CDC42SE1-207ENST00000540998 KRTAP2-4Q9BYR9 128 aa3.53□□□□□ -1.85
CDC42SE1-207ENST00000540998 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.85
CDC42SE1-207ENST00000540998 MT1EP04732 61 aa3.51□□□□□ -1.85
CDC42SE1-207ENST00000540998 CRCT1Q9UGL9 99 aa3.49□□□□□ -1.85
CDC42SE1-207ENST00000540998 MT1GP13640 62 aa3.43□□□□□ -1.86
CDC42SE1-207ENST00000540998 SYNE1Q8NF91 8797 aaKnown RBP3.38□□□□□ -1.87
CDC42SE1-207ENST00000540998 KRTAP19-4Q3LI73 84 aa3.33□□□□□ -1.88
CDC42SE1-207ENST00000540998 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
CDC42SE1-207ENST00000540998 MT1MQ8N339 61 aa3.28□□□□□ -1.88
CDC42SE1-207ENST00000540998 KRTAP4-9Q9BYQ8 210 aa3.27□□□□□ -1.89
CDC42SE1-207ENST00000540998 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
CDC42SE1-207ENST00000540998 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
CDC42SE1-207ENST00000540998 KRTAP19-6Q3LI70 58 aa3.25□□□□□ -1.89
CDC42SE1-207ENST00000540998 LCE4AQ5TA78 99 aa3.24□□□□□ -1.89
CDC42SE1-207ENST00000540998 KRTAP19-3Q7Z4W3 81 aa3.23□□□□□ -1.89
CDC42SE1-207ENST00000540998 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
CDC42SE1-207ENST00000540998 LCE3BQ5TA77 95 aa3.22□□□□□ -1.89
CDC42SE1-207ENST00000540998 MDN1Q9NU22 5596 aa3.21□□□□□ -1.9
CDC42SE1-207ENST00000540998 KRTAP9-6A0A140TA67 174 aa3.2□□□□□ -1.9
CDC42SE1-207ENST00000540998 KRTAP9-7A8MTY7 169 aa3.2□□□□□ -1.9
CDC42SE1-207ENST00000540998 SPRR2FQ96RM1 72 aa3.16□□□□□ -1.9
CDC42SE1-207ENST00000540998 KRTAP9-2Q9BYQ4 174 aa3.14□□□□□ -1.91
CDC42SE1-207ENST00000540998 KRTAP9-4Q9BYQ2 154 aa3.12□□□□□ -1.91
CDC42SE1-207ENST00000540998 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
CDC42SE1-207ENST00000540998 KRTAP9-9Q9BYP9 154 aa3.1□□□□□ -1.91
CDC42SE1-207ENST00000540998 LCE5AQ5TCM9 118 aa3.09□□□□□ -1.91
CDC42SE1-207ENST00000540998 KRTAP4-12Q9BQ66 201 aa3.07□□□□□ -1.92
CDC42SE1-207ENST00000540998 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
CDC42SE1-207ENST00000540998 KRTAP9-1A8MXZ3 250 aaPredicted RBP3□□□□□ -1.93
CDC42SE1-207ENST00000540998 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
CDC42SE1-207ENST00000540998 KRTAP5-5Q701N2 237 aaPredicted RBP2.93□□□□□ -1.94
CDC42SE1-207ENST00000540998 PRM1P04553 51 aa2.92□□□□□ -1.94
CDC42SE1-207ENST00000540998 MT1AP04731 61 aa2.89□□□□□ -1.95
CDC42SE1-207ENST00000540998 LCE3EQ5T5B0 92 aa2.89□□□□□ -1.95
CDC42SE1-207ENST00000540998 LCE1AQ5T7P2 110 aa2.86□□□□□ -1.95
CDC42SE1-207ENST00000540998 SPRR2EP22531 72 aa2.8□□□□□ -1.96
CDC42SE1-207ENST00000540998 SPRR2BP35325 72 aa2.8□□□□□ -1.96
CDC42SE1-207ENST00000540998 SPRR2AP35326 72 aa2.8□□□□□ -1.96
CDC42SE1-207ENST00000540998 KRTAP6-2Q3LI66 62 aa2.79□□□□□ -1.96
CDC42SE1-207ENST00000540998 LCE1DQ5T752 114 aa2.73□□□□□ -1.97
CDC42SE1-207ENST00000540998 KRTAP5-9P26371 169 aa2.73□□□□□ -1.97
CDC42SE1-207ENST00000540998 SPRR2DP22532 72 aa2.65□□□□□ -1.99
CDC42SE1-207ENST00000540998 KRTAP6-3Q3LI67 103 aa2.65□□□□□ -1.99
CDC42SE1-207ENST00000540998 MT3P25713 68 aa2.58□□□□□ -2
CDC42SE1-207ENST00000540998 KRTAP4-11Q9BYQ6 195 aa2.58□□□□□ -2
CDC42SE1-207ENST00000540998 NEBP20929 6669 aa2.55□□□□□ -2
CDC42SE1-207ENST00000540998 KRTAP2-2Q9BYT5 123 aa2.52□□□□□ -2.01
CDC42SE1-207ENST00000540998 MT4P47944 62 aa2.47□□□□□ -2.01
CDC42SE1-207ENST00000540998 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
CDC42SE1-207ENST00000540998 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
CDC42SE1-207ENST00000540998 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
CDC42SE1-207ENST00000540998 KRTAP20-1Q3LI63 56 aa2.39□□□□□ -2.03
CDC42SE1-207ENST00000540998 HMCN1Q96RW7 5635 aa2.38□□□□□ -2.03
CDC42SE1-207ENST00000540998 KRTAP5-4Q6L8H1 288 aa2.36□□□□□ -2.03
CDC42SE1-207ENST00000540998 LCE1EQ5T753 118 aa2.31□□□□□ -2.04
CDC42SE1-207ENST00000540998 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
CDC42SE1-207ENST00000540998 LCE1BQ5T7P3 118 aa2.25□□□□□ -2.05
CDC42SE1-207ENST00000540998 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
CDC42SE1-207ENST00000540998 KRTAP5-3Q6L8H2 238 aa2.18□□□□□ -2.06
CDC42SE1-207ENST00000540998 KRTAP5-10Q6L8G5 202 aa2.13□□□□□ -2.07
CDC42SE1-207ENST00000540998 MUC19Q7Z5P9 8384 aa2.1□□□□□ -2.07
CDC42SE1-207ENST00000540998 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
CDC42SE1-207ENST00000540998 KRTAP4-4Q9BYR3 166 aa1.97□□□□□ -2.09
CDC42SE1-207ENST00000540998 GPR98Q8WXG9 6306 aa1.96□□□□□ -2.1
CDC42SE1-207ENST00000540998 AHNAK2Q8IVF2 5795 aa1.94□□□□□ -2.1
CDC42SE1-207ENST00000540998 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
CDC42SE1-207ENST00000540998 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
CDC42SE1-207ENST00000540998 MUC5BQ9HC84 5762 aaPredicted RBP1.91□□□□□ -2.1
CDC42SE1-207ENST00000540998 KRTAP5-7Q6L8G8 165 aa1.84□□□□□ -2.11
CDC42SE1-207ENST00000540998 KRTAP5-8O75690 187 aa1.81□□□□□ -2.12
CDC42SE1-207ENST00000540998 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
CDC42SE1-207ENST00000540998 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.76□□□□□ -2.13
CDC42SE1-207ENST00000540998 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
CDC42SE1-207ENST00000540998 AHNAKQ09666 5890 aaKnown RBP1.58□□□□□ -2.16
CDC42SE1-207ENST00000540998 PHGR1C9JFL3 82 aa1.45□□□□□ -2.18
CDC42SE1-207ENST00000540998 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 207.6 ms