RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
CLIP1-213ENST00000540338 MT1MQ8N339 61 aa3.53□□□□□ -1.84
CLIP1-213ENST00000540338 SSPOA2VEC9 5147 aa3.53□□□□□ -1.84
CLIP1-213ENST00000540338 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
CLIP1-213ENST00000540338 KRTAP4-3Q9BYR4 195 aa3.49□□□□□ -1.85
CLIP1-213ENST00000540338 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.86
CLIP1-213ENST00000540338 LOC100996750A0A140TA64 210 aa3.45□□□□□ -1.86
CLIP1-213ENST00000540338 KRTAP2-3P0C7H8 128 aa3.43□□□□□ -1.86
CLIP1-213ENST00000540338 KRTAP2-4Q9BYR9 128 aa3.43□□□□□ -1.86
CLIP1-213ENST00000540338 KRTAP2-1Q9BYU5 128 aa3.43□□□□□ -1.86
CLIP1-213ENST00000540338 SPRR2EP22531 72 aa3.42□□□□□ -1.86
CLIP1-213ENST00000540338 SPRR2BP35325 72 aa3.42□□□□□ -1.86
CLIP1-213ENST00000540338 SPRR2AP35326 72 aa3.42□□□□□ -1.86
CLIP1-213ENST00000540338 FCGBPQ9Y6R7 5405 aaPredicted RBP3.4□□□□□ -1.87
CLIP1-213ENST00000540338 LCE5AQ5TCM9 118 aa3.36□□□□□ -1.87
CLIP1-213ENST00000540338 LCE3BQ5TA77 95 aa3.35□□□□□ -1.87
CLIP1-213ENST00000540338 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
CLIP1-213ENST00000540338 MUC12Q9UKN1 5478 aa3.31□□□□□ -1.88
CLIP1-213ENST00000540338 SPRR2DP22532 72 aa3.29□□□□□ -1.88
CLIP1-213ENST00000540338 KRTAP12-4P60329 112 aa3.27□□□□□ -1.89
CLIP1-213ENST00000540338 MACF1Q9UPN3 7388 aaKnown RBP3.26□□□□□ -1.89
CLIP1-213ENST00000540338 DSTQ03001 7570 aaKnown RBP3.25□□□□□ -1.89
CLIP1-213ENST00000540338 KRTAP9-6A0A140TA67 174 aa3.23□□□□□ -1.89
CLIP1-213ENST00000540338 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
CLIP1-213ENST00000540338 MT1AP04731 61 aa3.2□□□□□ -1.9
CLIP1-213ENST00000540338 SYNE2Q8WXH0 6885 aaKnown RBP3.19□□□□□ -1.9
CLIP1-213ENST00000540338 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
CLIP1-213ENST00000540338 KRTAP5-9P26371 169 aa3.15□□□□□ -1.9
CLIP1-213ENST00000540338 KRTAP6-1Q3LI64 71 aa3.14□□□□□ -1.91
CLIP1-213ENST00000540338 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CLIP1-213ENST00000540338 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.11□□□□□ -1.91
CLIP1-213ENST00000540338 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
CLIP1-213ENST00000540338 KRTAP4-9Q9BYQ8 210 aa3.08□□□□□ -1.92
CLIP1-213ENST00000540338 MT3P25713 68 aa3.02□□□□□ -1.93
CLIP1-213ENST00000540338 KRTAP9-7A8MTY7 169 aa3.01□□□□□ -1.93
CLIP1-213ENST00000540338 KRTAP9-4Q9BYQ2 154 aa2.99□□□□□ -1.93
CLIP1-213ENST00000540338 MDN1Q9NU22 5596 aa2.98□□□□□ -1.93
CLIP1-213ENST00000540338 KRTAP6-2Q3LI66 62 aa2.91□□□□□ -1.94
CLIP1-213ENST00000540338 MT4P47944 62 aa2.89□□□□□ -1.95
CLIP1-213ENST00000540338 KRTAP5-5Q701N2 237 aaPredicted RBP2.89□□□□□ -1.95
CLIP1-213ENST00000540338 PRM1P04553 51 aa2.85□□□□□ -1.95
CLIP1-213ENST00000540338 LCE4AQ5TA78 99 aa2.79□□□□□ -1.96
CLIP1-213ENST00000540338 KRTAP20-1Q3LI63 56 aa2.77□□□□□ -1.97
CLIP1-213ENST00000540338 NEBP20929 6669 aa2.76□□□□□ -1.97
CLIP1-213ENST00000540338 KRTAP2-2Q9BYT5 123 aa2.74□□□□□ -1.97
CLIP1-213ENST00000540338 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
CLIP1-213ENST00000540338 KRTAP4-6Q9BYQ5 205 aa2.68□□□□□ -1.98
CLIP1-213ENST00000540338 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.99
CLIP1-213ENST00000540338 LCE1DQ5T752 114 aa2.63□□□□□ -1.99
CLIP1-213ENST00000540338 KRTAP20-2Q3LI61 65 aa2.63□□□□□ -1.99
CLIP1-213ENST00000540338 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
CLIP1-213ENST00000540338 KRTAP5-2Q701N4 177 aa2.42□□□□□ -2.02
CLIP1-213ENST00000540338 HMCN1Q96RW7 5635 aa2.39□□□□□ -2.03
CLIP1-213ENST00000540338 KRTAP5-3Q6L8H2 238 aa2.36□□□□□ -2.03
CLIP1-213ENST00000540338 LCE1EQ5T753 118 aa2.35□□□□□ -2.03
CLIP1-213ENST00000540338 KRTAP4-11Q9BYQ6 195 aa2.25□□□□□ -2.05
CLIP1-213ENST00000540338 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
CLIP1-213ENST00000540338 LCE1CQ5T751 118 aa2.16□□□□□ -2.06
CLIP1-213ENST00000540338 GPR98Q8WXG9 6306 aa2.14□□□□□ -2.07
CLIP1-213ENST00000540338 KRTAP4-2Q9BYR5 136 aa2.11□□□□□ -2.07
CLIP1-213ENST00000540338 KRTAP5-10Q6L8G5 202 aa2.09□□□□□ -2.08
CLIP1-213ENST00000540338 KRTAP5-1Q6L8H4 278 aa2.08□□□□□ -2.08
CLIP1-213ENST00000540338 KRTAP9-9Q9BYP9 154 aa2.08□□□□□ -2.08
CLIP1-213ENST00000540338 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
CLIP1-213ENST00000540338 LCE1FQ5T754 118 aa2.01□□□□□ -2.09
CLIP1-213ENST00000540338 AHNAK2Q8IVF2 5795 aa1.99□□□□□ -2.09
CLIP1-213ENST00000540338 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
CLIP1-213ENST00000540338 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.94□□□□□ -2.1
CLIP1-213ENST00000540338 KRTAP4-12Q9BQ66 201 aa1.94□□□□□ -2.1
CLIP1-213ENST00000540338 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
CLIP1-213ENST00000540338 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
CLIP1-213ENST00000540338 KRTAP5-11Q6L8G4 156 aa1.87□□□□□ -2.11
CLIP1-213ENST00000540338 MUC5BQ9HC84 5762 aaPredicted RBP1.76□□□□□ -2.13
CLIP1-213ENST00000540338 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
CLIP1-213ENST00000540338 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
CLIP1-213ENST00000540338 PHGR1C9JFL3 82 aa1.59□□□□□ -2.15
CLIP1-213ENST00000540338 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 60.9 ms