RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
MSH6-210ENST00000540021 MT1EP04732 61 aa4.29□□□□□ -1.72
MSH6-210ENST00000540021 KRTAP2-3P0C7H8 128 aa4.24□□□□□ -1.73
MSH6-210ENST00000540021 KRTAP2-4Q9BYR9 128 aa4.24□□□□□ -1.73
MSH6-210ENST00000540021 KRTAP2-1Q9BYU5 128 aa4.24□□□□□ -1.73
MSH6-210ENST00000540021 LCE3BQ5TA77 95 aa4.22□□□□□ -1.73
MSH6-210ENST00000540021 LCE2AQ5TA79 106 aaPredicted RBP4.22□□□□□ -1.73
MSH6-210ENST00000540021 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
MSH6-210ENST00000540021 MUC12Q9UKN1 5478 aa4.15□□□□□ -1.74
MSH6-210ENST00000540021 KRTAP19-4Q3LI73 84 aa4.15□□□□□ -1.75
MSH6-210ENST00000540021 SSPOA2VEC9 5147 aa4.12□□□□□ -1.75
MSH6-210ENST00000540021 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
MSH6-210ENST00000540021 MT1MQ8N339 61 aa4.05□□□□□ -1.76
MSH6-210ENST00000540021 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
MSH6-210ENST00000540021 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
MSH6-210ENST00000540021 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
MSH6-210ENST00000540021 LCE3DQ9BYE3 92 aa3.92□□□□□ -1.78
MSH6-210ENST00000540021 LCE2DQ5TA82 110 aaPredicted RBP3.9□□□□□ -1.78
MSH6-210ENST00000540021 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
MSH6-210ENST00000540021 PRM1P04553 51 aa3.81□□□□□ -1.8
MSH6-210ENST00000540021 MACF1Q9UPN3 7388 aaKnown RBP3.74□□□□□ -1.81
MSH6-210ENST00000540021 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
MSH6-210ENST00000540021 KRTAP9-7A8MTY7 169 aa3.72□□□□□ -1.81
MSH6-210ENST00000540021 SPRR2EP22531 72 aa3.72□□□□□ -1.81
MSH6-210ENST00000540021 SPRR2BP35325 72 aa3.72□□□□□ -1.81
MSH6-210ENST00000540021 SPRR2AP35326 72 aa3.72□□□□□ -1.81
MSH6-210ENST00000540021 LCE5AQ5TCM9 118 aa3.7□□□□□ -1.82
MSH6-210ENST00000540021 KRTAP9-2Q9BYQ4 174 aa3.67□□□□□ -1.82
MSH6-210ENST00000540021 MT1AP04731 61 aa3.63□□□□□ -1.83
MSH6-210ENST00000540021 MDN1Q9NU22 5596 aa3.59□□□□□ -1.83
MSH6-210ENST00000540021 SPRR2DP22532 72 aa3.53□□□□□ -1.84
MSH6-210ENST00000540021 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
MSH6-210ENST00000540021 MUC19Q7Z5P9 8384 aa3.51□□□□□ -1.85
MSH6-210ENST00000540021 LCE1AQ5T7P2 110 aa3.44□□□□□ -1.86
MSH6-210ENST00000540021 MT3P25713 68 aa3.44□□□□□ -1.86
MSH6-210ENST00000540021 KRTAP5-5Q701N2 237 aaPredicted RBP3.4□□□□□ -1.87
MSH6-210ENST00000540021 KRTAP9-4Q9BYQ2 154 aa3.38□□□□□ -1.87
MSH6-210ENST00000540021 MT4P47944 62 aa3.28□□□□□ -1.88
MSH6-210ENST00000540021 KRTAP5-9P26371 169 aa3.21□□□□□ -1.9
MSH6-210ENST00000540021 KRTAP2-2Q9BYT5 123 aa3.21□□□□□ -1.9
MSH6-210ENST00000540021 KRTAP9-6A0A140TA67 174 aa3.17□□□□□ -1.9
MSH6-210ENST00000540021 KRTAP6-3Q3LI67 103 aa3.17□□□□□ -1.9
MSH6-210ENST00000540021 LCE1DQ5T752 114 aa3.16□□□□□ -1.9
MSH6-210ENST00000540021 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
MSH6-210ENST00000540021 KRTAP4-6Q9BYQ5 205 aa3□□□□□ -1.93
MSH6-210ENST00000540021 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.98□□□□□ -1.93
MSH6-210ENST00000540021 KRTAP4-11Q9BYQ6 195 aa2.91□□□□□ -1.94
MSH6-210ENST00000540021 LCE1EQ5T753 118 aa2.91□□□□□ -1.94
MSH6-210ENST00000540021 NEBP20929 6669 aa2.82□□□□□ -1.96
MSH6-210ENST00000540021 KRTAP20-2Q3LI61 65 aa2.8□□□□□ -1.96
MSH6-210ENST00000540021 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
MSH6-210ENST00000540021 MUC5ACP98088 5654 aa2.76□□□□□ -1.97
MSH6-210ENST00000540021 LCE4AQ5TA78 99 aa2.74□□□□□ -1.97
MSH6-210ENST00000540021 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
MSH6-210ENST00000540021 KRTAP5-2Q701N4 177 aa2.59□□□□□ -1.99
MSH6-210ENST00000540021 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
MSH6-210ENST00000540021 KRTAP20-1Q3LI63 56 aa2.54□□□□□ -2
MSH6-210ENST00000540021 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
MSH6-210ENST00000540021 KRTAP5-10Q6L8G5 202 aa2.52□□□□□ -2.01
MSH6-210ENST00000540021 KRTAP4-12Q9BQ66 201 aa2.34□□□□□ -2.03
MSH6-210ENST00000540021 KRTAP4-2Q9BYR5 136 aa2.34□□□□□ -2.03
MSH6-210ENST00000540021 LCE1CQ5T751 118 aa2.3□□□□□ -2.04
MSH6-210ENST00000540021 LCE1FQ5T754 118 aa2.27□□□□□ -2.05
MSH6-210ENST00000540021 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
MSH6-210ENST00000540021 AHNAK2Q8IVF2 5795 aa2.21□□□□□ -2.06
MSH6-210ENST00000540021 KRTAP21-2Q3LI59 83 aa2.21□□□□□ -2.06
MSH6-210ENST00000540021 MUC5BQ9HC84 5762 aaPredicted RBP2.2□□□□□ -2.06
MSH6-210ENST00000540021 GPR98Q8WXG9 6306 aa2.19□□□□□ -2.06
MSH6-210ENST00000540021 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
MSH6-210ENST00000540021 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
MSH6-210ENST00000540021 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.04□□□□□ -2.08
MSH6-210ENST00000540021 KRTAP9-9Q9BYP9 154 aa2.03□□□□□ -2.08
MSH6-210ENST00000540021 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
MSH6-210ENST00000540021 KRTAP5-11Q6L8G4 156 aa1.93□□□□□ -2.1
MSH6-210ENST00000540021 AHNAKQ09666 5890 aaKnown RBP1.8□□□□□ -2.12
MSH6-210ENST00000540021 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
MSH6-210ENST00000540021 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 60.3 ms