RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 FLGP20930 4061 aaPredicted RBP3.04□□□□□ -1.92
COL4A6-208ENST00000538570 MT1MQ8N339 61 aa3.04□□□□□ -1.92
COL4A6-208ENST00000538570 KRTAP19-6Q3LI70 58 aa3.03□□□□□ -1.92
COL4A6-208ENST00000538570 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
COL4A6-208ENST00000538570 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
COL4A6-208ENST00000538570 LOC100996750A0A140TA64 210 aa2.98□□□□□ -1.93
COL4A6-208ENST00000538570 RNF213Q63HN8 5207 aa2.97□□□□□ -1.93
COL4A6-208ENST00000538570 KRTAP9-6A0A140TA67 174 aa2.97□□□□□ -1.93
COL4A6-208ENST00000538570 LCE2AQ5TA79 106 aaPredicted RBP2.97□□□□□ -1.93
COL4A6-208ENST00000538570 SYNE1Q8NF91 8797 aaKnown RBP2.96□□□□□ -1.94
COL4A6-208ENST00000538570 LCE1DQ5T752 114 aa2.96□□□□□ -1.94
COL4A6-208ENST00000538570 FAT4Q6V0I7 4981 aa2.95□□□□□ -1.94
COL4A6-208ENST00000538570 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
COL4A6-208ENST00000538570 FSIP2Q5CZC0 6907 aa2.91□□□□□ -1.94
COL4A6-208ENST00000538570 KRTAP20-1Q3LI63 56 aa2.9□□□□□ -1.95
COL4A6-208ENST00000538570 KRTAP2-3P0C7H8 128 aa2.87□□□□□ -1.95
COL4A6-208ENST00000538570 KRTAP2-4Q9BYR9 128 aa2.87□□□□□ -1.95
COL4A6-208ENST00000538570 KRTAP2-1Q9BYU5 128 aa2.87□□□□□ -1.95
COL4A6-208ENST00000538570 KRTAP19-7Q3SYF9 63 aa2.86□□□□□ -1.95
COL4A6-208ENST00000538570 MT1AP04731 61 aa2.86□□□□□ -1.95
COL4A6-208ENST00000538570 HMCN2Q8NDA2 5059 aa2.86□□□□□ -1.95
COL4A6-208ENST00000538570 LCE5AQ5TCM9 118 aa2.83□□□□□ -1.96
COL4A6-208ENST00000538570 KRTAP4-9Q9BYQ8 210 aa2.83□□□□□ -1.96
COL4A6-208ENST00000538570 MUC2Q02817 5179 aa2.8□□□□□ -1.96
COL4A6-208ENST00000538570 KRTAP9-7A8MTY7 169 aa2.8□□□□□ -1.96
COL4A6-208ENST00000538570 KRTAP6-2Q3LI66 62 aa2.73□□□□□ -1.97
COL4A6-208ENST00000538570 LCE1AQ5T7P2 110 aa2.7□□□□□ -1.98
COL4A6-208ENST00000538570 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
COL4A6-208ENST00000538570 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
COL4A6-208ENST00000538570 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
COL4A6-208ENST00000538570 KRTAP6-3Q3LI67 103 aa2.66□□□□□ -1.98
COL4A6-208ENST00000538570 LCE4AQ5TA78 99 aa2.66□□□□□ -1.98
COL4A6-208ENST00000538570 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
COL4A6-208ENST00000538570 SYNE2Q8WXH0 6885 aaKnown RBP2.64□□□□□ -1.99
COL4A6-208ENST00000538570 OBSCNQ5VST9 7968 aa2.64□□□□□ -1.99
COL4A6-208ENST00000538570 KRTAP9-4Q9BYQ2 154 aa2.64□□□□□ -1.99
COL4A6-208ENST00000538570 KRTAP9-6A8MVA2 160 aa2.62□□□□□ -1.99
COL4A6-208ENST00000538570 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.6□□□□□ -1.99
COL4A6-208ENST00000538570 KRTAP2-2Q9BYT5 123 aa2.56□□□□□ -2
COL4A6-208ENST00000538570 USH2AO75445 5202 aa2.51□□□□□ -2.01
COL4A6-208ENST00000538570 FCGBPQ9Y6R7 5405 aaPredicted RBP2.47□□□□□ -2.01
COL4A6-208ENST00000538570 KRTAP9-9Q9BYP9 154 aa2.41□□□□□ -2.02
COL4A6-208ENST00000538570 DSTQ03001 7570 aaKnown RBP2.4□□□□□ -2.02
COL4A6-208ENST00000538570 KRTAP4-11Q9BYQ6 195 aa2.37□□□□□ -2.03
COL4A6-208ENST00000538570 KMT2DO14686 5537 aa2.34□□□□□ -2.04
COL4A6-208ENST00000538570 MACF1Q9UPN3 7388 aaKnown RBP2.32□□□□□ -2.04
COL4A6-208ENST00000538570 KRTAP5-9P26371 169 aa2.32□□□□□ -2.04
COL4A6-208ENST00000538570 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
COL4A6-208ENST00000538570 NEBP20929 6669 aa2.26□□□□□ -2.05
COL4A6-208ENST00000538570 KRTAP20-2Q3LI61 65 aa2.25□□□□□ -2.05
COL4A6-208ENST00000538570 MUC12Q9UKN1 5478 aa2.22□□□□□ -2.05
COL4A6-208ENST00000538570 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
COL4A6-208ENST00000538570 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
COL4A6-208ENST00000538570 KRTAP4-6Q9BYQ5 205 aa2.15□□□□□ -2.06
COL4A6-208ENST00000538570 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
COL4A6-208ENST00000538570 KRTAP4-12Q9BQ66 201 aa2.07□□□□□ -2.08
COL4A6-208ENST00000538570 KRTAP4-2Q9BYR5 136 aa2.07□□□□□ -2.08
COL4A6-208ENST00000538570 GPR98Q8WXG9 6306 aa2.07□□□□□ -2.08
COL4A6-208ENST00000538570 KRTAP5-5Q701N2 237 aaPredicted RBP2.05□□□□□ -2.08
COL4A6-208ENST00000538570 KRTAP5-4Q6L8H1 288 aa1.99□□□□□ -2.09
COL4A6-208ENST00000538570 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
COL4A6-208ENST00000538570 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
COL4A6-208ENST00000538570 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
COL4A6-208ENST00000538570 KRTAP5-3Q6L8H2 238 aa1.76□□□□□ -2.13
COL4A6-208ENST00000538570 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
COL4A6-208ENST00000538570 KRTAP5-2Q701N4 177 aa1.61□□□□□ -2.15
COL4A6-208ENST00000538570 KRTAP5-8O75690 187 aa1.6□□□□□ -2.15
COL4A6-208ENST00000538570 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
COL4A6-208ENST00000538570 KRTAP5-7Q6L8G8 165 aa1.56□□□□□ -2.16
COL4A6-208ENST00000538570 KRTAP5-10Q6L8G5 202 aa1.55□□□□□ -2.16
COL4A6-208ENST00000538570 MUC5BQ9HC84 5762 aaPredicted RBP1.46□□□□□ -2.18
COL4A6-208ENST00000538570 KRTAP5-11Q6L8G4 156 aa1.43□□□□□ -2.18
COL4A6-208ENST00000538570 KRTAP5-1Q6L8H4 278 aa1.41□□□□□ -2.18
COL4A6-208ENST00000538570 KRTAP21-1Q3LI58 79 aa1.37□□□□□ -2.19
COL4A6-208ENST00000538570 KRTAP21-2Q3LI59 83 aa1.34□□□□□ -2.19
COL4A6-208ENST00000538570 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.29□□□□□ -2.2
COL4A6-208ENST00000538570 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 102.5 ms