RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 DSTQ03001 7570 aaKnown RBP3.87□□□□□ -1.79
CLSTN3-207ENST00000537408 KRTAP10-7P60409 375 aaPredicted RBP3.84□□□□□ -1.79
CLSTN3-207ENST00000537408 SPRR2DP22532 72 aa3.81□□□□□ -1.8
CLSTN3-207ENST00000537408 KRTAP19-5Q3LI72 72 aa3.81□□□□□ -1.8
CLSTN3-207ENST00000537408 KRTAP20-1Q3LI63 56 aa3.73□□□□□ -1.81
CLSTN3-207ENST00000537408 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
CLSTN3-207ENST00000537408 KRTAP4-8A0A0G2JLE6 195 aa3.7□□□□□ -1.82
CLSTN3-207ENST00000537408 KRTAP4-8Q9BYQ9 185 aa3.7□□□□□ -1.82
CLSTN3-207ENST00000537408 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
CLSTN3-207ENST00000537408 USH2AO75445 5202 aa3.69□□□□□ -1.82
CLSTN3-207ENST00000537408 KRTAP12-4P60329 112 aa3.69□□□□□ -1.82
CLSTN3-207ENST00000537408 KRTAP19-4Q3LI73 84 aa3.68□□□□□ -1.82
CLSTN3-207ENST00000537408 SYNE2Q8WXH0 6885 aaKnown RBP3.64□□□□□ -1.83
CLSTN3-207ENST00000537408 FCGBPQ9Y6R7 5405 aaPredicted RBP3.6□□□□□ -1.83
CLSTN3-207ENST00000537408 MT1GP13640 62 aa3.59□□□□□ -1.84
CLSTN3-207ENST00000537408 LCE1AQ5T7P2 110 aa3.56□□□□□ -1.84
CLSTN3-207ENST00000537408 KMT2DO14686 5537 aa3.55□□□□□ -1.84
CLSTN3-207ENST00000537408 LCE3BQ5TA77 95 aa3.55□□□□□ -1.84
CLSTN3-207ENST00000537408 SSPOA2VEC9 5147 aa3.54□□□□□ -1.84
CLSTN3-207ENST00000537408 KRTAP19-3Q7Z4W3 81 aa3.54□□□□□ -1.84
CLSTN3-207ENST00000537408 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
CLSTN3-207ENST00000537408 KRTAP4-7Q9BYR0 210 aa3.52□□□□□ -1.85
CLSTN3-207ENST00000537408 KRTAP2-2Q9BYT5 123 aa3.51□□□□□ -1.85
CLSTN3-207ENST00000537408 KRTAP5-9P26371 169 aa3.48□□□□□ -1.85
CLSTN3-207ENST00000537408 MT1EP04732 61 aa3.47□□□□□ -1.85
CLSTN3-207ENST00000537408 MT1LQ93083 61 aa3.42□□□□□ -1.86
CLSTN3-207ENST00000537408 KRTAP19-7Q3SYF9 63 aa3.39□□□□□ -1.87
CLSTN3-207ENST00000537408 MT1MQ8N339 61 aa3.34□□□□□ -1.87
CLSTN3-207ENST00000537408 PRM1P04553 51 aa3.33□□□□□ -1.88
CLSTN3-207ENST00000537408 NEBP20929 6669 aa3.32□□□□□ -1.88
CLSTN3-207ENST00000537408 MT4P47944 62 aa3.3□□□□□ -1.88
CLSTN3-207ENST00000537408 LCE5AQ5TCM9 118 aa3.27□□□□□ -1.89
CLSTN3-207ENST00000537408 LOC100996750A0A140TA64 210 aa3.25□□□□□ -1.89
CLSTN3-207ENST00000537408 LCE4AQ5TA78 99 aa3.25□□□□□ -1.89
CLSTN3-207ENST00000537408 KRTAP4-3Q9BYR4 195 aa3.25□□□□□ -1.89
CLSTN3-207ENST00000537408 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
CLSTN3-207ENST00000537408 LCE3DQ9BYE3 92 aa3.23□□□□□ -1.89
CLSTN3-207ENST00000537408 MT1AP04731 61 aa3.2□□□□□ -1.9
CLSTN3-207ENST00000537408 MDN1Q9NU22 5596 aa3.17□□□□□ -1.9
CLSTN3-207ENST00000537408 KRTAP4-9Q9BYQ8 210 aa3.16□□□□□ -1.9
CLSTN3-207ENST00000537408 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
CLSTN3-207ENST00000537408 MUC12Q9UKN1 5478 aa3.08□□□□□ -1.92
CLSTN3-207ENST00000537408 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
CLSTN3-207ENST00000537408 KRTAP6-2Q3LI66 62 aa3.01□□□□□ -1.93
CLSTN3-207ENST00000537408 LCE1DQ5T752 114 aa3□□□□□ -1.93
CLSTN3-207ENST00000537408 MT3P25713 68 aa2.97□□□□□ -1.93
CLSTN3-207ENST00000537408 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
CLSTN3-207ENST00000537408 LCE1BQ5T7P3 118 aa2.89□□□□□ -1.95
CLSTN3-207ENST00000537408 KRTAP6-1Q3LI64 71 aa2.88□□□□□ -1.95
CLSTN3-207ENST00000537408 KRTAP4-6Q9BYQ5 205 aa2.84□□□□□ -1.96
CLSTN3-207ENST00000537408 KRTAP20-2Q3LI61 65 aa2.81□□□□□ -1.96
CLSTN3-207ENST00000537408 KRTAP9-4Q9BYQ2 154 aa2.8□□□□□ -1.96
CLSTN3-207ENST00000537408 KRTAP5-4Q6L8H1 288 aa2.78□□□□□ -1.96
CLSTN3-207ENST00000537408 KRTAP5-3Q6L8H2 238 aa2.68□□□□□ -1.98
CLSTN3-207ENST00000537408 KRTAP9-9Q9BYP9 154 aa2.67□□□□□ -1.98
CLSTN3-207ENST00000537408 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
CLSTN3-207ENST00000537408 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
CLSTN3-207ENST00000537408 KRTAP4-11Q9BYQ6 195 aa2.6□□□□□ -1.99
CLSTN3-207ENST00000537408 HMCN1Q96RW7 5635 aa2.53□□□□□ -2
CLSTN3-207ENST00000537408 AHNAK2Q8IVF2 5795 aa2.47□□□□□ -2.01
CLSTN3-207ENST00000537408 KRTAP5-10Q6L8G5 202 aa2.43□□□□□ -2.02
CLSTN3-207ENST00000537408 KRTAP5-7Q6L8G8 165 aa2.4□□□□□ -2.03
CLSTN3-207ENST00000537408 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
CLSTN3-207ENST00000537408 KRTAP5-2Q701N4 177 aa2.37□□□□□ -2.03
CLSTN3-207ENST00000537408 KRTAP5-8O75690 187 aa2.34□□□□□ -2.03
CLSTN3-207ENST00000537408 AHNAKQ09666 5890 aaKnown RBP2.2□□□□□ -2.06
CLSTN3-207ENST00000537408 KRTAP4-12Q9BQ66 201 aa2.14□□□□□ -2.07
CLSTN3-207ENST00000537408 KRTAP4-2Q9BYR5 136 aa2.14□□□□□ -2.07
CLSTN3-207ENST00000537408 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
CLSTN3-207ENST00000537408 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
CLSTN3-207ENST00000537408 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
CLSTN3-207ENST00000537408 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
CLSTN3-207ENST00000537408 KRTAP5-11Q6L8G4 156 aa1.89□□□□□ -2.11
CLSTN3-207ENST00000537408 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
CLSTN3-207ENST00000537408 KRTAP21-2Q3LI59 83 aa1.78□□□□□ -2.12
CLSTN3-207ENST00000537408 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.12
CLSTN3-207ENST00000537408 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 162.8 ms