RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 SPRR2FQ96RM1 72 aa7.32□□□□□ -1.24
TNFRSF1A-205ENST00000534885 MUC12Q9UKN1 5478 aa7.31□□□□□ -1.24
TNFRSF1A-205ENST00000534885 INE1O15225 51 aa7.29□□□□□ -1.24
TNFRSF1A-205ENST00000534885 MT1LQ93083 61 aa7.24□□□□□ -1.25
TNFRSF1A-205ENST00000534885 KRTAP5-9P26371 169 aa7.23□□□□□ -1.25
TNFRSF1A-205ENST00000534885 KRTAP6-3Q3LI67 103 aa7.12□□□□□ -1.27
TNFRSF1A-205ENST00000534885 KRTAP19-3Q7Z4W3 81 aa7.12□□□□□ -1.27
TNFRSF1A-205ENST00000534885 LCE3CQ5T5A8 94 aa7.1□□□□□ -1.27
TNFRSF1A-205ENST00000534885 MDN1Q9NU22 5596 aa7.07□□□□□ -1.28
TNFRSF1A-205ENST00000534885 KRTAP4-7Q9BYR0 210 aa7.07□□□□□ -1.28
TNFRSF1A-205ENST00000534885 MT1GP13640 62 aa7.02□□□□□ -1.29
TNFRSF1A-205ENST00000534885 KRTAP19-4Q3LI73 84 aa7□□□□□ -1.29
TNFRSF1A-205ENST00000534885 LCE1AQ5T7P2 110 aa7□□□□□ -1.29
TNFRSF1A-205ENST00000534885 LCE5AQ5TCM9 118 aa7□□□□□ -1.29
TNFRSF1A-205ENST00000534885 MT1MQ8N339 61 aa6.97□□□□□ -1.29
TNFRSF1A-205ENST00000534885 KRTAP9-7A8MTY7 169 aa6.96□□□□□ -1.3
TNFRSF1A-205ENST00000534885 SPRR2EP22531 72 aa6.95□□□□□ -1.3
TNFRSF1A-205ENST00000534885 SPRR2BP35325 72 aa6.95□□□□□ -1.3
TNFRSF1A-205ENST00000534885 SPRR2AP35326 72 aa6.95□□□□□ -1.3
TNFRSF1A-205ENST00000534885 KRTAP4-3Q9BYR4 195 aa6.89□□□□□ -1.31
TNFRSF1A-205ENST00000534885 KRTAP9-6A8MVA2 160 aa6.77□□□□□ -1.33
TNFRSF1A-205ENST00000534885 DSTQ03001 7570 aaKnown RBP6.76□□□□□ -1.33
TNFRSF1A-205ENST00000534885 SPRR2DP22532 72 aa6.69□□□□□ -1.34
TNFRSF1A-205ENST00000534885 NEBP20929 6669 aa6.68□□□□□ -1.34
TNFRSF1A-205ENST00000534885 LOC100996750A0A140TA64 210 aa6.64□□□□□ -1.35
TNFRSF1A-205ENST00000534885 LCE3BQ5TA77 95 aa6.43□□□□□ -1.38
TNFRSF1A-205ENST00000534885 KRTAP5-5Q701N2 237 aaPredicted RBP6.3□□□□□ -1.4
TNFRSF1A-205ENST00000534885 KRTAP2-3P0C7H8 128 aa6.22□□□□□ -1.41
TNFRSF1A-205ENST00000534885 KRTAP2-4Q9BYR9 128 aa6.22□□□□□ -1.41
TNFRSF1A-205ENST00000534885 KRTAP2-1Q9BYU5 128 aa6.21□□□□□ -1.42
TNFRSF1A-205ENST00000534885 KRTAP20-1Q3LI63 56 aa6.14□□□□□ -1.43
TNFRSF1A-205ENST00000534885 MT1AP04731 61 aa6.13□□□□□ -1.43
TNFRSF1A-205ENST00000534885 KRTAP6-1Q3LI64 71 aa6.12□□□□□ -1.43
TNFRSF1A-205ENST00000534885 KRTAP2-2Q9BYT5 123 aa6.09□□□□□ -1.43
TNFRSF1A-205ENST00000534885 KRTAP5-4Q6L8H1 288 aa6.02□□□□□ -1.45
TNFRSF1A-205ENST00000534885 SYNE1Q8NF91 8797 aaKnown RBP6.01□□□□□ -1.45
TNFRSF1A-205ENST00000534885 LCE4AQ5TA78 99 aa5.89□□□□□ -1.47
TNFRSF1A-205ENST00000534885 MT4P47944 62 aa5.84□□□□□ -1.47
TNFRSF1A-205ENST00000534885 KRTAP9-4Q9BYQ2 154 aa5.83□□□□□ -1.48
TNFRSF1A-205ENST00000534885 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
TNFRSF1A-205ENST00000534885 KRTAP4-9Q9BYQ8 210 aa5.81□□□□□ -1.48
TNFRSF1A-205ENST00000534885 KRTAP4-6Q9BYQ5 205 aa5.81□□□□□ -1.48
TNFRSF1A-205ENST00000534885 LCE1DQ5T752 114 aa5.75□□□□□ -1.49
TNFRSF1A-205ENST00000534885 HMCN1Q96RW7 5635 aa5.69□□□□□ -1.5
TNFRSF1A-205ENST00000534885 KRTAP20-2Q3LI61 65 aa5.65□□□□□ -1.5
TNFRSF1A-205ENST00000534885 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.51
TNFRSF1A-205ENST00000534885 MT3P25713 68 aa5.55□□□□□ -1.52
TNFRSF1A-205ENST00000534885 KRTAP5-2Q701N4 177 aa5.46□□□□□ -1.54
TNFRSF1A-205ENST00000534885 KRTAP5-3Q6L8H2 238 aa5.45□□□□□ -1.54
TNFRSF1A-205ENST00000534885 OBSCNQ5VST9 7968 aa5.32□□□□□ -1.56
TNFRSF1A-205ENST00000534885 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
TNFRSF1A-205ENST00000534885 LCE3EQ5T5B0 92 aa5.15□□□□□ -1.59
TNFRSF1A-205ENST00000534885 AHNAK2Q8IVF2 5795 aa5.05□□□□□ -1.6
TNFRSF1A-205ENST00000534885 KRTAP4-11Q9BYQ6 195 aa4.91□□□□□ -1.62
TNFRSF1A-205ENST00000534885 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
TNFRSF1A-205ENST00000534885 PRM1P04553 51 aa4.81□□□□□ -1.64
TNFRSF1A-205ENST00000534885 KRTAP5-10Q6L8G5 202 aa4.79□□□□□ -1.64
TNFRSF1A-205ENST00000534885 KRTAP5-1Q6L8H4 278 aa4.75□□□□□ -1.65
TNFRSF1A-205ENST00000534885 KRTAP5-8O75690 187 aa4.74□□□□□ -1.65
TNFRSF1A-205ENST00000534885 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
TNFRSF1A-205ENST00000534885 GPR98Q8WXG9 6306 aa4.57□□□□□ -1.68
TNFRSF1A-205ENST00000534885 KRTAP4-2Q9BYR5 136 aa4.55□□□□□ -1.68
TNFRSF1A-205ENST00000534885 KRTAP5-7Q6L8G8 165 aa4.54□□□□□ -1.68
TNFRSF1A-205ENST00000534885 MUC5ACP98088 5654 aa4.54□□□□□ -1.68
TNFRSF1A-205ENST00000534885 LCE1CQ5T751 118 aa4.5□□□□□ -1.69
TNFRSF1A-205ENST00000534885 KRTAP9-9Q9BYP9 154 aa4.25□□□□□ -1.73
TNFRSF1A-205ENST00000534885 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.2□□□□□ -1.74
TNFRSF1A-205ENST00000534885 KRTAP4-12Q9BQ66 201 aa4.12□□□□□ -1.75
TNFRSF1A-205ENST00000534885 MUC5BQ9HC84 5762 aaPredicted RBP4.1□□□□□ -1.75
TNFRSF1A-205ENST00000534885 KRTAP21-2Q3LI59 83 aa4□□□□□ -1.77
TNFRSF1A-205ENST00000534885 KRTAP5-11Q6L8G4 156 aa3.98□□□□□ -1.77
TNFRSF1A-205ENST00000534885 AHNAKQ09666 5890 aaKnown RBP3.78□□□□□ -1.81
TNFRSF1A-205ENST00000534885 LCE1FQ5T754 118 aa3.74□□□□□ -1.81
TNFRSF1A-205ENST00000534885 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
TNFRSF1A-205ENST00000534885 PHGR1C9JFL3 82 aa3.43□□□□□ -1.86
TNFRSF1A-205ENST00000534885 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
TNFRSF1A-205ENST00000534885 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.91
TNFRSF1A-205ENST00000534885 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 89.8 ms