RNA–Protein interactions for RNA: ENST00000534320.5

PHRF1-206, Transcript of PHD and ring finger domains 1, humanhuman

TSL 5

Gene PHRF1, Length 5,178 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-206ENST00000534320 KRTAP19-6Q3LI70 58 aa5.68□□□□□ -1.5
PHRF1-206ENST00000534320 UBR4Q5T4S7 5183 aa5.68□□□□□ -1.5
PHRF1-206ENST00000534320 LCE3EQ5T5B0 92 aa5.67□□□□□ -1.5
PHRF1-206ENST00000534320 MUC2Q02817 5179 aa5.58□□□□□ -1.52
PHRF1-206ENST00000534320 MT1MQ8N339 61 aa5.51□□□□□ -1.53
PHRF1-206ENST00000534320 FSIP2Q5CZC0 6907 aa5.5□□□□□ -1.53
PHRF1-206ENST00000534320 KRTAP19-7Q3SYF9 63 aa5.48□□□□□ -1.53
PHRF1-206ENST00000534320 LCE2DQ5TA82 110 aaPredicted RBP5.46□□□□□ -1.54
PHRF1-206ENST00000534320 KRTAP9-2Q9BYQ4 174 aa5.44□□□□□ -1.54
PHRF1-206ENST00000534320 SYNE1Q8NF91 8797 aaKnown RBP5.41□□□□□ -1.54
PHRF1-206ENST00000534320 KRTAP4-3Q9BYR4 195 aa5.38□□□□□ -1.55
PHRF1-206ENST00000534320 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
PHRF1-206ENST00000534320 PRM1P04553 51 aa5.31□□□□□ -1.56
PHRF1-206ENST00000534320 MT3P25713 68 aa5.12□□□□□ -1.59
PHRF1-206ENST00000534320 KRTAP2-3P0C7H8 128 aa5.1□□□□□ -1.59
PHRF1-206ENST00000534320 KRTAP2-4Q9BYR9 128 aa5.1□□□□□ -1.59
PHRF1-206ENST00000534320 KRTAP2-1Q9BYU5 128 aa5.1□□□□□ -1.59
PHRF1-206ENST00000534320 MT1AP04731 61 aa5.07□□□□□ -1.6
PHRF1-206ENST00000534320 KRTAP9-6A8MVA2 160 aa5.06□□□□□ -1.6
PHRF1-206ENST00000534320 MT4P47944 62 aa5.03□□□□□ -1.6
PHRF1-206ENST00000534320 KRTAP9-6A0A140TA67 174 aa5.02□□□□□ -1.61
PHRF1-206ENST00000534320 USH2AO75445 5202 aa5.01□□□□□ -1.61
PHRF1-206ENST00000534320 LCE5AQ5TCM9 118 aa4.97□□□□□ -1.61
PHRF1-206ENST00000534320 LCE1AQ5T7P2 110 aa4.93□□□□□ -1.62
PHRF1-206ENST00000534320 KRTAP4-9Q9BYQ8 210 aa4.9□□□□□ -1.62
PHRF1-206ENST00000534320 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
PHRF1-206ENST00000534320 SYNE2Q8WXH0 6885 aaKnown RBP4.86□□□□□ -1.63
PHRF1-206ENST00000534320 KRTAP6-1Q3LI64 71 aa4.84□□□□□ -1.64
PHRF1-206ENST00000534320 LCE1BQ5T7P3 118 aa4.78□□□□□ -1.64
PHRF1-206ENST00000534320 KMT2DO14686 5537 aa4.78□□□□□ -1.64
PHRF1-206ENST00000534320 OBSCNQ5VST9 7968 aa4.77□□□□□ -1.65
PHRF1-206ENST00000534320 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.76□□□□□ -1.65
PHRF1-206ENST00000534320 KRTAP9-7A8MTY7 169 aa4.75□□□□□ -1.65
PHRF1-206ENST00000534320 LCE1DQ5T752 114 aa4.72□□□□□ -1.65
PHRF1-206ENST00000534320 FCGBPQ9Y6R7 5405 aaPredicted RBP4.7□□□□□ -1.66
PHRF1-206ENST00000534320 KRTAP9-4Q9BYQ2 154 aa4.69□□□□□ -1.66
PHRF1-206ENST00000534320 KRTAP6-2Q3LI66 62 aa4.66□□□□□ -1.66
PHRF1-206ENST00000534320 KRTAP20-1Q3LI63 56 aa4.62□□□□□ -1.67
PHRF1-206ENST00000534320 SSPOA2VEC9 5147 aa4.57□□□□□ -1.68
PHRF1-206ENST00000534320 DSTQ03001 7570 aaKnown RBP4.57□□□□□ -1.68
PHRF1-206ENST00000534320 LCE4AQ5TA78 99 aa4.54□□□□□ -1.68
PHRF1-206ENST00000534320 MACF1Q9UPN3 7388 aaKnown RBP4.51□□□□□ -1.69
PHRF1-206ENST00000534320 KRTAP5-9P26371 169 aa4.46□□□□□ -1.7
PHRF1-206ENST00000534320 KRTAP2-2Q9BYT5 123 aa4.46□□□□□ -1.7
PHRF1-206ENST00000534320 MUC12Q9UKN1 5478 aa4.46□□□□□ -1.7
PHRF1-206ENST00000534320 NEBP20929 6669 aa4.13□□□□□ -1.75
PHRF1-206ENST00000534320 KRTAP4-6Q9BYQ5 205 aa4.07□□□□□ -1.76
PHRF1-206ENST00000534320 LCE1CQ5T751 118 aa4.05□□□□□ -1.76
PHRF1-206ENST00000534320 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
PHRF1-206ENST00000534320 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
PHRF1-206ENST00000534320 MDN1Q9NU22 5596 aa4.05□□□□□ -1.76
PHRF1-206ENST00000534320 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
PHRF1-206ENST00000534320 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
PHRF1-206ENST00000534320 MUC19Q7Z5P9 8384 aa3.88□□□□□ -1.79
PHRF1-206ENST00000534320 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.8
PHRF1-206ENST00000534320 KRTAP5-4Q6L8H1 288 aa3.75□□□□□ -1.81
PHRF1-206ENST00000534320 KRTAP9-9Q9BYP9 154 aa3.72□□□□□ -1.81
PHRF1-206ENST00000534320 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
PHRF1-206ENST00000534320 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
PHRF1-206ENST00000534320 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.88
PHRF1-206ENST00000534320 KRTAP4-2Q9BYR5 136 aa3.34□□□□□ -1.88
PHRF1-206ENST00000534320 MUC5ACP98088 5654 aa3.34□□□□□ -1.88
PHRF1-206ENST00000534320 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
PHRF1-206ENST00000534320 KRTAP5-2Q701N4 177 aa3.21□□□□□ -1.9
PHRF1-206ENST00000534320 HMCN1Q96RW7 5635 aa3.2□□□□□ -1.9
PHRF1-206ENST00000534320 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
PHRF1-206ENST00000534320 KRTAP5-8O75690 187 aa3.01□□□□□ -1.93
PHRF1-206ENST00000534320 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
PHRF1-206ENST00000534320 KRTAP5-1Q6L8H4 278 aa2.8□□□□□ -1.96
PHRF1-206ENST00000534320 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
PHRF1-206ENST00000534320 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
PHRF1-206ENST00000534320 KRTAP21-2Q3LI59 83 aa2.66□□□□□ -1.98
PHRF1-206ENST00000534320 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
PHRF1-206ENST00000534320 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.55□□□□□ -2
PHRF1-206ENST00000534320 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
PHRF1-206ENST00000534320 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
PHRF1-206ENST00000534320 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
PHRF1-206ENST00000534320 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms