RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 LCE3DQ9BYE3 92 aa5.66□□□□□ -1.5
PHRF1-205ENST00000533464 KRTAP19-6Q3LI70 58 aa5.63□□□□□ -1.51
PHRF1-205ENST00000533464 KRTAP9-2Q9BYQ4 174 aa5.6□□□□□ -1.51
PHRF1-205ENST00000533464 LCE2AQ5TA79 106 aaPredicted RBP5.59□□□□□ -1.51
PHRF1-205ENST00000533464 MT1MQ8N339 61 aa5.58□□□□□ -1.52
PHRF1-205ENST00000533464 LCE3EQ5T5B0 92 aa5.56□□□□□ -1.52
PHRF1-205ENST00000533464 MUC2Q02817 5179 aa5.5□□□□□ -1.53
PHRF1-205ENST00000533464 KRTAP4-3Q9BYR4 195 aa5.49□□□□□ -1.53
PHRF1-205ENST00000533464 LOC100996750A0A140TA64 210 aa5.49□□□□□ -1.53
PHRF1-205ENST00000533464 KRTAP19-7Q3SYF9 63 aa5.48□□□□□ -1.53
PHRF1-205ENST00000533464 KRTAP9-6A0A140TA67 174 aa5.46□□□□□ -1.54
PHRF1-205ENST00000533464 LCE2DQ5TA82 110 aaPredicted RBP5.34□□□□□ -1.55
PHRF1-205ENST00000533464 MT3P25713 68 aa5.29□□□□□ -1.56
PHRF1-205ENST00000533464 MT4P47944 62 aa5.22□□□□□ -1.57
PHRF1-205ENST00000533464 MT1AP04731 61 aa5.14□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP2-3P0C7H8 128 aa5.14□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP2-4Q9BYR9 128 aa5.14□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP2-1Q9BYU5 128 aa5.14□□□□□ -1.59
PHRF1-205ENST00000533464 SYNE2Q8WXH0 6885 aaKnown RBP5.12□□□□□ -1.59
PHRF1-205ENST00000533464 PRM1P04553 51 aa5.11□□□□□ -1.59
PHRF1-205ENST00000533464 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP20-1Q3LI63 56 aa5.11□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP9-6A8MVA2 160 aa5.09□□□□□ -1.59
PHRF1-205ENST00000533464 KRTAP9-7A8MTY7 169 aa5.08□□□□□ -1.6
PHRF1-205ENST00000533464 KRTAP4-9Q9BYQ8 210 aa5.08□□□□□ -1.6
PHRF1-205ENST00000533464 FCGBPQ9Y6R7 5405 aaPredicted RBP4.99□□□□□ -1.61
PHRF1-205ENST00000533464 LCE1DQ5T752 114 aa4.96□□□□□ -1.61
PHRF1-205ENST00000533464 LCE1BQ5T7P3 118 aa4.95□□□□□ -1.62
PHRF1-205ENST00000533464 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
PHRF1-205ENST00000533464 USH2AO75445 5202 aa4.93□□□□□ -1.62
PHRF1-205ENST00000533464 LCE1AQ5T7P2 110 aa4.92□□□□□ -1.62
PHRF1-205ENST00000533464 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.62
PHRF1-205ENST00000533464 DSTQ03001 7570 aaKnown RBP4.87□□□□□ -1.63
PHRF1-205ENST00000533464 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.85□□□□□ -1.63
PHRF1-205ENST00000533464 KRTAP6-3Q3LI67 103 aa4.82□□□□□ -1.64
PHRF1-205ENST00000533464 KMT2DO14686 5537 aa4.78□□□□□ -1.64
PHRF1-205ENST00000533464 KRTAP6-2Q3LI66 62 aa4.77□□□□□ -1.65
PHRF1-205ENST00000533464 KRTAP9-4Q9BYQ2 154 aa4.73□□□□□ -1.65
PHRF1-205ENST00000533464 KRTAP2-2Q9BYT5 123 aa4.62□□□□□ -1.67
PHRF1-205ENST00000533464 LCE4AQ5TA78 99 aa4.55□□□□□ -1.68
PHRF1-205ENST00000533464 MACF1Q9UPN3 7388 aaKnown RBP4.53□□□□□ -1.68
PHRF1-205ENST00000533464 MUC12Q9UKN1 5478 aa4.51□□□□□ -1.69
PHRF1-205ENST00000533464 SSPOA2VEC9 5147 aa4.45□□□□□ -1.7
PHRF1-205ENST00000533464 KRTAP5-9P26371 169 aa4.32□□□□□ -1.72
PHRF1-205ENST00000533464 MDN1Q9NU22 5596 aa4.25□□□□□ -1.73
PHRF1-205ENST00000533464 NEBP20929 6669 aa4.21□□□□□ -1.74
PHRF1-205ENST00000533464 GPR98Q8WXG9 6306 aa4.19□□□□□ -1.74
PHRF1-205ENST00000533464 LCE1CQ5T751 118 aa4.13□□□□□ -1.75
PHRF1-205ENST00000533464 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
PHRF1-205ENST00000533464 LCE1FQ5T754 118 aa4.13□□□□□ -1.75
PHRF1-205ENST00000533464 KRTAP4-6Q9BYQ5 205 aa4.1□□□□□ -1.75
PHRF1-205ENST00000533464 KRTAP9-9Q9BYP9 154 aa4.09□□□□□ -1.76
PHRF1-205ENST00000533464 MUC19Q7Z5P9 8384 aa4.06□□□□□ -1.76
PHRF1-205ENST00000533464 KRTAP20-2Q3LI61 65 aa3.99□□□□□ -1.77
PHRF1-205ENST00000533464 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
PHRF1-205ENST00000533464 KRTAP5-5Q701N2 237 aaPredicted RBP3.74□□□□□ -1.81
PHRF1-205ENST00000533464 KRTAP5-4Q6L8H1 288 aa3.66□□□□□ -1.82
PHRF1-205ENST00000533464 KRTAP4-4Q9BYR3 166 aa3.55□□□□□ -1.84
PHRF1-205ENST00000533464 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
PHRF1-205ENST00000533464 KRTAP4-12Q9BQ66 201 aa3.5□□□□□ -1.85
PHRF1-205ENST00000533464 KRTAP4-2Q9BYR5 136 aa3.5□□□□□ -1.85
PHRF1-205ENST00000533464 HMCN1Q96RW7 5635 aa3.39□□□□□ -1.87
PHRF1-205ENST00000533464 KRTAP5-3Q6L8H2 238 aa3.26□□□□□ -1.89
PHRF1-205ENST00000533464 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
PHRF1-205ENST00000533464 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
PHRF1-205ENST00000533464 KRTAP5-8O75690 187 aa3□□□□□ -1.93
PHRF1-205ENST00000533464 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
PHRF1-205ENST00000533464 PHGR1C9JFL3 82 aa2.75□□□□□ -1.97
PHRF1-205ENST00000533464 MUC5BQ9HC84 5762 aaPredicted RBP2.73□□□□□ -1.97
PHRF1-205ENST00000533464 KRTAP5-1Q6L8H4 278 aa2.7□□□□□ -1.98
PHRF1-205ENST00000533464 AHNAKQ09666 5890 aaKnown RBP2.69□□□□□ -1.98
PHRF1-205ENST00000533464 KRTAP5-11Q6L8G4 156 aa2.66□□□□□ -1.98
PHRF1-205ENST00000533464 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
PHRF1-205ENST00000533464 KRTAP5-7Q6L8G8 165 aa2.46□□□□□ -2.01
PHRF1-205ENST00000533464 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
PHRF1-205ENST00000533464 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
PHRF1-205ENST00000533464 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 52.1 ms