RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 KRTAP2-4Q9BYR9 128 aa4.05□□□□□ -1.76
USP35-207ENST00000530546 KRTAP2-1Q9BYU5 128 aa4.05□□□□□ -1.76
USP35-207ENST00000530546 FCGBPQ9Y6R7 5405 aaPredicted RBP4.05□□□□□ -1.76
USP35-207ENST00000530546 MT1LQ93083 61 aa4.02□□□□□ -1.77
USP35-207ENST00000530546 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.02□□□□□ -1.77
USP35-207ENST00000530546 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
USP35-207ENST00000530546 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.78
USP35-207ENST00000530546 KRTAP9-7A8MTY7 169 aa3.94□□□□□ -1.78
USP35-207ENST00000530546 KRTAP19-4Q3LI73 84 aa3.89□□□□□ -1.79
USP35-207ENST00000530546 MACF1Q9UPN3 7388 aaKnown RBP3.88□□□□□ -1.79
USP35-207ENST00000530546 KRTAP4-3Q9BYR4 195 aa3.88□□□□□ -1.79
USP35-207ENST00000530546 SPRR2FQ96RM1 72 aa3.84□□□□□ -1.79
USP35-207ENST00000530546 KRTAP19-3Q7Z4W3 81 aa3.83□□□□□ -1.8
USP35-207ENST00000530546 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
USP35-207ENST00000530546 LOC100996750A0A140TA64 210 aa3.81□□□□□ -1.8
USP35-207ENST00000530546 MT1MQ8N339 61 aa3.8□□□□□ -1.8
USP35-207ENST00000530546 SYNE2Q8WXH0 6885 aaKnown RBP3.8□□□□□ -1.8
USP35-207ENST00000530546 MT1GP13640 62 aa3.79□□□□□ -1.8
USP35-207ENST00000530546 DSTQ03001 7570 aaKnown RBP3.77□□□□□ -1.81
USP35-207ENST00000530546 LCE5AQ5TCM9 118 aa3.71□□□□□ -1.82
USP35-207ENST00000530546 KRTAP5-9P26371 169 aa3.69□□□□□ -1.82
USP35-207ENST00000530546 MDN1Q9NU22 5596 aa3.68□□□□□ -1.82
USP35-207ENST00000530546 KRTAP12-4P60329 112 aa3.65□□□□□ -1.83
USP35-207ENST00000530546 LCE1AQ5T7P2 110 aa3.57□□□□□ -1.84
USP35-207ENST00000530546 NEBP20929 6669 aa3.56□□□□□ -1.84
USP35-207ENST00000530546 SPRR2EP22531 72 aa3.55□□□□□ -1.84
USP35-207ENST00000530546 SPRR2BP35325 72 aa3.55□□□□□ -1.84
USP35-207ENST00000530546 SPRR2AP35326 72 aa3.55□□□□□ -1.84
USP35-207ENST00000530546 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
USP35-207ENST00000530546 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.84
USP35-207ENST00000530546 OBSCNQ5VST9 7968 aa3.49□□□□□ -1.85
USP35-207ENST00000530546 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
USP35-207ENST00000530546 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
USP35-207ENST00000530546 LCE3BQ5TA77 95 aa3.46□□□□□ -1.86
USP35-207ENST00000530546 KRTAP6-1Q3LI64 71 aa3.42□□□□□ -1.86
USP35-207ENST00000530546 SPRR2DP22532 72 aa3.39□□□□□ -1.87
USP35-207ENST00000530546 MT1AP04731 61 aa3.37□□□□□ -1.87
USP35-207ENST00000530546 KRTAP4-9Q9BYQ8 210 aa3.36□□□□□ -1.87
USP35-207ENST00000530546 KRTAP5-5Q701N2 237 aaPredicted RBP3.34□□□□□ -1.87
USP35-207ENST00000530546 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
USP35-207ENST00000530546 LCE1DQ5T752 114 aa3.27□□□□□ -1.89
USP35-207ENST00000530546 PRM1P04553 51 aa3.27□□□□□ -1.89
USP35-207ENST00000530546 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
USP35-207ENST00000530546 LCE3DQ9BYE3 92 aa3.25□□□□□ -1.89
USP35-207ENST00000530546 KRTAP9-4Q9BYQ2 154 aa3.19□□□□□ -1.9
USP35-207ENST00000530546 KRTAP6-2Q3LI66 62 aa3.12□□□□□ -1.91
USP35-207ENST00000530546 MT3P25713 68 aa3.05□□□□□ -1.92
USP35-207ENST00000530546 KRTAP5-4Q6L8H1 288 aa3.03□□□□□ -1.93
USP35-207ENST00000530546 MT4P47944 62 aa3.02□□□□□ -1.93
USP35-207ENST00000530546 LCE4AQ5TA78 99 aa3.02□□□□□ -1.93
USP35-207ENST00000530546 KRTAP4-6Q9BYQ5 205 aa3□□□□□ -1.93
USP35-207ENST00000530546 MUC19Q7Z5P9 8384 aa2.95□□□□□ -1.94
USP35-207ENST00000530546 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
USP35-207ENST00000530546 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
USP35-207ENST00000530546 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
USP35-207ENST00000530546 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
USP35-207ENST00000530546 KRTAP9-9Q9BYP9 154 aa2.74□□□□□ -1.97
USP35-207ENST00000530546 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
USP35-207ENST00000530546 KRTAP5-3Q6L8H2 238 aa2.73□□□□□ -1.97
USP35-207ENST00000530546 KRTAP5-10Q6L8G5 202 aa2.73□□□□□ -1.97
USP35-207ENST00000530546 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
USP35-207ENST00000530546 MUC5ACP98088 5654 aa2.58□□□□□ -2
USP35-207ENST00000530546 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
USP35-207ENST00000530546 KRTAP4-11Q9BYQ6 195 aa2.52□□□□□ -2.01
USP35-207ENST00000530546 KRTAP5-8O75690 187 aa2.44□□□□□ -2.02
USP35-207ENST00000530546 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
USP35-207ENST00000530546 KRTAP4-2Q9BYR5 136 aa2.4□□□□□ -2.03
USP35-207ENST00000530546 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
USP35-207ENST00000530546 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
USP35-207ENST00000530546 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
USP35-207ENST00000530546 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
USP35-207ENST00000530546 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.19□□□□□ -2.06
USP35-207ENST00000530546 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
USP35-207ENST00000530546 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.08
USP35-207ENST00000530546 KRTAP4-12Q9BQ66 201 aa2.06□□□□□ -2.08
USP35-207ENST00000530546 KRTAP5-11Q6L8G4 156 aa2.04□□□□□ -2.08
USP35-207ENST00000530546 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
USP35-207ENST00000530546 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 10.4 ms