RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	KRTAP15-1	Q3LI76	137 aa		4.46	□□□□□ -1.7
SPIDR-222	ENST00000524006	MT1B	P07438	61 aa		4.44	□□□□□ -1.7
SPIDR-222	ENST00000524006	NEB	P20929	6669 aa		4.4	□□□□□ -1.71
SPIDR-222	ENST00000524006	KRTAP6-3	Q3LI67	103 aa		4.39	□□□□□ -1.71
SPIDR-222	ENST00000524006	MUC12	Q9UKN1	5478 aa		4.36	□□□□□ -1.71
SPIDR-222	ENST00000524006	KRTAP10-5	P60370	271 aa		4.36	□□□□□ -1.71
SPIDR-222	ENST00000524006	MT1X	P80297	61 aa		4.36	□□□□□ -1.71
SPIDR-222	ENST00000524006	KRTAP10-12	P60413	245 aa		4.34	□□□□□ -1.71
SPIDR-222	ENST00000524006	LCE3A	Q5TA76	89 aa		4.34	□□□□□ -1.71
SPIDR-222	ENST00000524006	LUZP6	Q538Z0	58 aa		4.31	□□□□□ -1.72
SPIDR-222	ENST00000524006	NDUFAF8	A1L188	74 aa		4.26	□□□□□ -1.73
SPIDR-222	ENST00000524006	MDN1	Q9NU22	5596 aa		4.23	□□□□□ -1.73
SPIDR-222	ENST00000524006	KRTAP8-1	Q8IUC2	63 aa		4.22	□□□□□ -1.73
SPIDR-222	ENST00000524006	KRTAP10-7	P60409	375 aa	Predicted RBP	4.2	□□□□□ -1.74
SPIDR-222	ENST00000524006	KMT2D	O14686	5537 aa		4.2	□□□□□ -1.74
SPIDR-222	ENST00000524006	KRTAP12-3	P60328	96 aa		4.19	□□□□□ -1.74
SPIDR-222	ENST00000524006	KRTAP20-1	Q3LI63	56 aa		4.17	□□□□□ -1.74
SPIDR-222	ENST00000524006	KRTAP5-9	P26371	169 aa		4.1	□□□□□ -1.75
SPIDR-222	ENST00000524006	SPRR5	A0A1B0GTR4	108 aa		4.08	□□□□□ -1.76
SPIDR-222	ENST00000524006	KRTAP19-5	Q3LI72	72 aa		4.05	□□□□□ -1.76
SPIDR-222	ENST00000524006	KRTAP2-3	P0C7H8	128 aa		4	□□□□□ -1.77
SPIDR-222	ENST00000524006	KRTAP2-4	Q9BYR9	128 aa		4	□□□□□ -1.77
SPIDR-222	ENST00000524006	SPRR2E	P22531	72 aa		3.9	□□□□□ -1.79
SPIDR-222	ENST00000524006	SPRR2B	P35325	72 aa		3.9	□□□□□ -1.79
SPIDR-222	ENST00000524006	SPRR2A	P35326	72 aa		3.9	□□□□□ -1.79
SPIDR-222	ENST00000524006	LCE3C	Q5T5A8	94 aa		3.9	□□□□□ -1.79
SPIDR-222	ENST00000524006	SPRR2F	Q96RM1	72 aa		3.9	□□□□□ -1.79
SPIDR-222	ENST00000524006	KRTAP2-2	Q9BYT5	123 aa		3.87	□□□□□ -1.79
SPIDR-222	ENST00000524006	KRTAP2-1	Q9BYU5	128 aa		3.87	□□□□□ -1.79
SPIDR-222	ENST00000524006	KRTAP19-7	Q3SYF9	63 aa		3.86	□□□□□ -1.79
SPIDR-222	ENST00000524006	LCE1A	Q5T7P2	110 aa		3.84	□□□□□ -1.79
SPIDR-222	ENST00000524006	MT1E	P04732	61 aa		3.83	□□□□□ -1.8
SPIDR-222	ENST00000524006	MT1L	Q93083	61 aa		3.79	□□□□□ -1.8
SPIDR-222	ENST00000524006	SPRR2D	P22532	72 aa		3.77	□□□□□ -1.81
SPIDR-222	ENST00000524006	GPR98	Q8WXG9	6306 aa		3.76	□□□□□ -1.81
SPIDR-222	ENST00000524006	KRTAP19-3	Q7Z4W3	81 aa		3.66	□□□□□ -1.82
SPIDR-222	ENST00000524006	DST	Q03001	7570 aa	Known RBP	3.65	□□□□□ -1.83
SPIDR-222	ENST00000524006	MT1G	P13640	62 aa		3.64	□□□□□ -1.83
SPIDR-222	ENST00000524006	MT1M	Q8N339	61 aa		3.61	□□□□□ -1.83
SPIDR-222	ENST00000524006	KRTAP9-6	A8MVA2	160 aa		3.58	□□□□□ -1.84
SPIDR-222	ENST00000524006	MT3	P25713	68 aa		3.57	□□□□□ -1.84
SPIDR-222	ENST00000524006	INE1	O15225	51 aa		3.55	□□□□□ -1.84
SPIDR-222	ENST00000524006	KRTAP4-3	Q9BYR4	195 aa		3.5	□□□□□ -1.85
SPIDR-222	ENST00000524006	HMCN1	Q96RW7	5635 aa		3.48	□□□□□ -1.85
SPIDR-222	ENST00000524006	AHNAK2	Q8IVF2	5795 aa		3.43	□□□□□ -1.86
SPIDR-222	ENST00000524006	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.39	□□□□□ -1.87
SPIDR-222	ENST00000524006	KRTAP5-11	Q6L8G4	156 aa		3.36	□□□□□ -1.87
SPIDR-222	ENST00000524006	LCE1E	Q5T753	118 aa		3.33	□□□□□ -1.88
SPIDR-222	ENST00000524006	MT4	P47944	62 aa		3.32	□□□□□ -1.88
SPIDR-222	ENST00000524006	KRTAP5-10	Q6L8G5	202 aa		3.29	□□□□□ -1.88
SPIDR-222	ENST00000524006	MT1A	P04731	61 aa		3.25	□□□□□ -1.89
SPIDR-222	ENST00000524006	KRTAP5-4	Q6L8H1	288 aa		3.24	□□□□□ -1.89
SPIDR-222	ENST00000524006	KRTAP5-7	Q6L8G8	165 aa		3.18	□□□□□ -1.9
SPIDR-222	ENST00000524006	KRTAP6-1	Q3LI64	71 aa		3.17	□□□□□ -1.9
SPIDR-222	ENST00000524006	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.14	□□□□□ -1.91
SPIDR-222	ENST00000524006	KRTAP20-2	Q3LI61	65 aa		3.07	□□□□□ -1.92
SPIDR-222	ENST00000524006	LCE1F	Q5T754	118 aa		3.04	□□□□□ -1.92
SPIDR-222	ENST00000524006	SYNE1	Q8NF91	8797 aa	Known RBP	3.03	□□□□□ -1.92
SPIDR-222	ENST00000524006	KRTAP12-4	P60329	112 aa		3.02	□□□□□ -1.93
SPIDR-222	ENST00000524006	LCE3D	Q9BYE3	92 aa		2.99	□□□□□ -1.93
SPIDR-222	ENST00000524006	LCE3E	Q5T5B0	92 aa		2.94	□□□□□ -1.94
SPIDR-222	ENST00000524006	KRTAP5-1	Q6L8H4	278 aa		2.93	□□□□□ -1.94
SPIDR-222	ENST00000524006	KRTAP6-2	Q3LI66	62 aa		2.91	□□□□□ -1.94
SPIDR-222	ENST00000524006	AHNAK	Q09666	5890 aa	Known RBP	2.91	□□□□□ -1.94
SPIDR-222	ENST00000524006	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.89	□□□□□ -1.95
SPIDR-222	ENST00000524006	MUC5AC	P98088	5654 aa		2.86	□□□□□ -1.95
SPIDR-222	ENST00000524006	KRTAP4-4	Q9BYR3	166 aa		2.81	□□□□□ -1.96
SPIDR-222	ENST00000524006	KRTAP5-2	Q701N4	177 aa		2.8	□□□□□ -1.96
SPIDR-222	ENST00000524006	KRTAP5-8	O75690	187 aa		2.77	□□□□□ -1.97
SPIDR-222	ENST00000524006	OBSCN	Q5VST9	7968 aa		2.73	□□□□□ -1.97
SPIDR-222	ENST00000524006	PRM1	P04553	51 aa		2.67	□□□□□ -1.98
SPIDR-222	ENST00000524006	LCE1B	Q5T7P3	118 aa		2.4	□□□□□ -2.03
SPIDR-222	ENST00000524006	LCE1C	Q5T751	118 aa		2.28	□□□□□ -2.04
SPIDR-222	ENST00000524006	KRTAP21-2	Q3LI59	83 aa		2.03	□□□□□ -2.08
SPIDR-222	ENST00000524006	PHGR1	C9JFL3	82 aa		1.92	□□□□□ -2.1
SPIDR-222	ENST00000524006	MUC19	Q7Z5P9	8384 aa		1.86	□□□□□ -2.11
SPIDR-222	ENST00000524006	KRTAP21-1	Q3LI58	79 aa		1.61	□□□□□ -2.15
SPIDR-222	ENST00000524006	MUC16	Q8WXI7	14507 aa		1.19	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 6.5 ms