RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MUC2Q02817 5179 aa2.82□□□□□ -1.96
LSM1-202ENST00000520286 DNAH8Q96JB1 4490 aa2.82□□□□□ -1.96
LSM1-202ENST00000520286 RPL37P61927 97 aaKnown RBP2.81□□□□□ -1.96
LSM1-202ENST00000520286 FSIP2Q5CZC0 6907 aa2.8□□□□□ -1.96
LSM1-202ENST00000520286 PKHD1L1Q86WI1 4243 aa2.8□□□□□ -1.96
LSM1-202ENST00000520286 TNXBP22105 4242 aa2.78□□□□□ -1.96
LSM1-202ENST00000520286 RPS29P62273 56 aaKnown RBP2.76□□□□□ -1.97
LSM1-202ENST00000520286 C10orf95Q9H7T3 257 aa2.76□□□□□ -1.97
LSM1-202ENST00000520286 LPAP08519 4548 aa2.76□□□□□ -1.97
LSM1-202ENST00000520286 S4R3F8 94 aa2.72□□□□□ -1.97
LSM1-202ENST00000520286 A0A0D9SG42 100 aa2.66□□□□□ -1.98
LSM1-202ENST00000520286 PLAC4Q8WY50 150 aa2.61□□□□□ -1.99
LSM1-202ENST00000520286 KRTAP5-7Q6L8G8 165 aa2.6□□□□□ -1.99
LSM1-202ENST00000520286 C9orf92A6NGG3 77 aa2.59□□□□□ -1.99
LSM1-202ENST00000520286 M0QZ58 72 aa2.58□□□□□ -2
LSM1-202ENST00000520286 KRTAP4-1Q9BYQ7 146 aa2.57□□□□□ -2
LSM1-202ENST00000520286 MUC17Q685J3 4493 aa2.53□□□□□ -2
LSM1-202ENST00000520286 MT1HP80294 61 aa2.53□□□□□ -2
LSM1-202ENST00000520286 KRTAP19-2Q3LHN2 52 aa2.53□□□□□ -2
LSM1-202ENST00000520286 INE1O15225 51 aa2.49□□□□□ -2.01
LSM1-202ENST00000520286 MACF1Q9UPN3 7388 aaKnown RBP2.45□□□□□ -2.02
LSM1-202ENST00000520286 SSPOA2VEC9 5147 aa2.45□□□□□ -2.02
LSM1-202ENST00000520286 FCGBPQ9Y6R7 5405 aaPredicted RBP2.44□□□□□ -2.02
LSM1-202ENST00000520286 USH2AO75445 5202 aa2.43□□□□□ -2.02
LSM1-202ENST00000520286 SYNE2Q8WXH0 6885 aaKnown RBP2.42□□□□□ -2.02
LSM1-202ENST00000520286 M0R2T5 61 aa2.41□□□□□ -2.02
LSM1-202ENST00000520286 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.03
LSM1-202ENST00000520286 KRTAP20-1Q3LI63 56 aa2.34□□□□□ -2.03
LSM1-202ENST00000520286 KRTAP19-6Q3LI70 58 aa2.32□□□□□ -2.04
LSM1-202ENST00000520286 MUC19Q7Z5P9 8384 aa2.31□□□□□ -2.04
LSM1-202ENST00000520286 NEBP20929 6669 aa2.3□□□□□ -2.04
LSM1-202ENST00000520286 MT2AP02795 61 aa2.28□□□□□ -2.04
LSM1-202ENST00000520286 TNP1P09430 55 aa2.28□□□□□ -2.04
LSM1-202ENST00000520286 MT1FP04733 61 aa2.27□□□□□ -2.05
LSM1-202ENST00000520286 FLGP20930 4061 aaPredicted RBP2.26□□□□□ -2.05
LSM1-202ENST00000520286 KRTAP2-3P0C7H8 128 aa2.23□□□□□ -2.05
LSM1-202ENST00000520286 KRTAP2-4Q9BYR9 128 aa2.23□□□□□ -2.05
LSM1-202ENST00000520286 KMT2DO14686 5537 aa2.19□□□□□ -2.06
LSM1-202ENST00000520286 MUC12Q9UKN1 5478 aa2.18□□□□□ -2.06
LSM1-202ENST00000520286 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
LSM1-202ENST00000520286 KRTAP2-1Q9BYU5 128 aa2.15□□□□□ -2.07
LSM1-202ENST00000520286 KRTAP8-1Q8IUC2 63 aa2.14□□□□□ -2.07
LSM1-202ENST00000520286 GPR98Q8WXG9 6306 aa2.11□□□□□ -2.07
LSM1-202ENST00000520286 SPRR2GQ9BYE4 73 aa2.08□□□□□ -2.08
LSM1-202ENST00000520286 MDN1Q9NU22 5596 aa2.08□□□□□ -2.08
LSM1-202ENST00000520286 SPRR2EP22531 72 aa2.03□□□□□ -2.08
LSM1-202ENST00000520286 SPRR2BP35325 72 aa2.03□□□□□ -2.08
LSM1-202ENST00000520286 SPRR2AP35326 72 aa2.03□□□□□ -2.08
LSM1-202ENST00000520286 MT1BP07438 61 aa2.01□□□□□ -2.09
LSM1-202ENST00000520286 KRTAP5-8O75690 187 aa2□□□□□ -2.09
LSM1-202ENST00000520286 SPRR2FQ96RM1 72 aa2□□□□□ -2.09
LSM1-202ENST00000520286 SPRR2DP22532 72 aa1.97□□□□□ -2.09
LSM1-202ENST00000520286 KRTAP19-8Q3LI54 63 aa1.97□□□□□ -2.09
LSM1-202ENST00000520286 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
LSM1-202ENST00000520286 MT1XP80297 61 aa1.94□□□□□ -2.1
LSM1-202ENST00000520286 KRTAP5-10Q6L8G5 202 aa1.87□□□□□ -2.11
LSM1-202ENST00000520286 KRTAP19-5Q3LI72 72 aa1.86□□□□□ -2.11
LSM1-202ENST00000520286 HMCN1Q96RW7 5635 aa1.76□□□□□ -2.13
LSM1-202ENST00000520286 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
LSM1-202ENST00000520286 MT4P47944 62 aa1.75□□□□□ -2.13
LSM1-202ENST00000520286 KRTAP19-7Q3SYF9 63 aa1.73□□□□□ -2.13
LSM1-202ENST00000520286 MT1LQ93083 61 aa1.7□□□□□ -2.14
LSM1-202ENST00000520286 MT1EP04732 61 aa1.68□□□□□ -2.14
LSM1-202ENST00000520286 KRTAP19-3Q7Z4W3 81 aa1.66□□□□□ -2.14
LSM1-202ENST00000520286 MT1AP04731 61 aa1.61□□□□□ -2.15
LSM1-202ENST00000520286 MT1GP13640 62 aa1.61□□□□□ -2.15
LSM1-202ENST00000520286 KRTAP20-2Q3LI61 65 aa1.59□□□□□ -2.15
LSM1-202ENST00000520286 PRM1P04553 51 aa1.56□□□□□ -2.16
LSM1-202ENST00000520286 MT1MQ8N339 61 aa1.55□□□□□ -2.16
LSM1-202ENST00000520286 AHNAKQ09666 5890 aaKnown RBP1.54□□□□□ -2.16
LSM1-202ENST00000520286 MUC5ACP98088 5654 aa1.54□□□□□ -2.16
LSM1-202ENST00000520286 SYNE1Q8NF91 8797 aaKnown RBP1.48□□□□□ -2.17
LSM1-202ENST00000520286 MUC5BQ9HC84 5762 aaPredicted RBP1.48□□□□□ -2.17
LSM1-202ENST00000520286 KRTAP6-2Q3LI66 62 aa1.44□□□□□ -2.18
LSM1-202ENST00000520286 KRTAP6-1Q3LI64 71 aa1.43□□□□□ -2.18
LSM1-202ENST00000520286 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
LSM1-202ENST00000520286 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
LSM1-202ENST00000520286 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 123.8 ms