RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SPRR2AP35326 72 aa4.22□□□□□ -1.73
USP53-209ENST00000514665 KMT2DO14686 5537 aa4.21□□□□□ -1.74
USP53-209ENST00000514665 MT1LQ93083 61 aa4.19□□□□□ -1.74
USP53-209ENST00000514665 MT1EP04732 61 aa4.16□□□□□ -1.74
USP53-209ENST00000514665 KRTAP19-3Q7Z4W3 81 aa4.13□□□□□ -1.75
USP53-209ENST00000514665 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
USP53-209ENST00000514665 FCGBPQ9Y6R7 5405 aaPredicted RBP4.07□□□□□ -1.76
USP53-209ENST00000514665 SPRR2DP22532 72 aa4.06□□□□□ -1.76
USP53-209ENST00000514665 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
USP53-209ENST00000514665 LOC100996750A0A140TA64 210 aa4.03□□□□□ -1.76
USP53-209ENST00000514665 LCE3EQ5T5B0 92 aa4□□□□□ -1.77
USP53-209ENST00000514665 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
USP53-209ENST00000514665 MT1MQ8N339 61 aa4□□□□□ -1.77
USP53-209ENST00000514665 LCE2AQ5TA79 106 aaPredicted RBP3.95□□□□□ -1.78
USP53-209ENST00000514665 KRTAP19-6Q3LI70 58 aa3.94□□□□□ -1.78
USP53-209ENST00000514665 LCE2DQ5TA82 110 aaPredicted RBP3.91□□□□□ -1.78
USP53-209ENST00000514665 SYNE2Q8WXH0 6885 aaKnown RBP3.87□□□□□ -1.79
USP53-209ENST00000514665 SSPOA2VEC9 5147 aa3.85□□□□□ -1.79
USP53-209ENST00000514665 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
USP53-209ENST00000514665 KRTAP4-9Q9BYQ8 210 aa3.78□□□□□ -1.8
USP53-209ENST00000514665 MUC12Q9UKN1 5478 aa3.78□□□□□ -1.8
USP53-209ENST00000514665 KRTAP2-3P0C7H8 128 aa3.77□□□□□ -1.81
USP53-209ENST00000514665 KRTAP2-4Q9BYR9 128 aa3.77□□□□□ -1.81
USP53-209ENST00000514665 KRTAP2-1Q9BYU5 128 aa3.77□□□□□ -1.81
USP53-209ENST00000514665 PRM1P04553 51 aa3.75□□□□□ -1.81
USP53-209ENST00000514665 KRTAP9-2Q9BYQ4 174 aa3.74□□□□□ -1.81
USP53-209ENST00000514665 MT3P25713 68 aa3.74□□□□□ -1.81
USP53-209ENST00000514665 MT4P47944 62 aa3.69□□□□□ -1.82
USP53-209ENST00000514665 MT1AP04731 61 aa3.66□□□□□ -1.82
USP53-209ENST00000514665 MACF1Q9UPN3 7388 aaKnown RBP3.57□□□□□ -1.84
USP53-209ENST00000514665 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
USP53-209ENST00000514665 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
USP53-209ENST00000514665 LCE1BQ5T7P3 118 aa3.55□□□□□ -1.84
USP53-209ENST00000514665 LCE5AQ5TCM9 118 aa3.53□□□□□ -1.84
USP53-209ENST00000514665 LCE1AQ5T7P2 110 aa3.44□□□□□ -1.86
USP53-209ENST00000514665 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
USP53-209ENST00000514665 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
USP53-209ENST00000514665 MDN1Q9NU22 5596 aa3.38□□□□□ -1.87
USP53-209ENST00000514665 KRTAP9-7A8MTY7 169 aa3.37□□□□□ -1.87
USP53-209ENST00000514665 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
USP53-209ENST00000514665 MUC19Q7Z5P9 8384 aa3.32□□□□□ -1.88
USP53-209ENST00000514665 KRTAP6-3Q3LI67 103 aa3.29□□□□□ -1.88
USP53-209ENST00000514665 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.26□□□□□ -1.89
USP53-209ENST00000514665 KRTAP20-1Q3LI63 56 aa3.14□□□□□ -1.91
USP53-209ENST00000514665 LCE4AQ5TA78 99 aa3.11□□□□□ -1.91
USP53-209ENST00000514665 KRTAP2-2Q9BYT5 123 aa3.07□□□□□ -1.92
USP53-209ENST00000514665 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
USP53-209ENST00000514665 NEBP20929 6669 aa3□□□□□ -1.93
USP53-209ENST00000514665 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.94
USP53-209ENST00000514665 KRTAP4-6Q9BYQ5 205 aa2.95□□□□□ -1.94
USP53-209ENST00000514665 LCE1EQ5T753 118 aa2.92□□□□□ -1.94
USP53-209ENST00000514665 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
USP53-209ENST00000514665 LCE1FQ5T754 118 aa2.85□□□□□ -1.95
USP53-209ENST00000514665 KRTAP4-11Q9BYQ6 195 aa2.83□□□□□ -1.96
USP53-209ENST00000514665 KRTAP20-2Q3LI61 65 aa2.82□□□□□ -1.96
USP53-209ENST00000514665 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
USP53-209ENST00000514665 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
USP53-209ENST00000514665 HMCN1Q96RW7 5635 aa2.65□□□□□ -1.98
USP53-209ENST00000514665 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
USP53-209ENST00000514665 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
USP53-209ENST00000514665 KRTAP4-12Q9BQ66 201 aa2.53□□□□□ -2
USP53-209ENST00000514665 KRTAP4-2Q9BYR5 136 aa2.53□□□□□ -2
USP53-209ENST00000514665 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
USP53-209ENST00000514665 AHNAK2Q8IVF2 5795 aa2.41□□□□□ -2.02
USP53-209ENST00000514665 KRTAP5-3Q6L8H2 238 aa2.29□□□□□ -2.04
USP53-209ENST00000514665 KRTAP5-2Q701N4 177 aa2.25□□□□□ -2.05
USP53-209ENST00000514665 MUC5BQ9HC84 5762 aaPredicted RBP2.21□□□□□ -2.06
USP53-209ENST00000514665 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.06
USP53-209ENST00000514665 KRTAP5-8O75690 187 aa2.12□□□□□ -2.07
USP53-209ENST00000514665 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
USP53-209ENST00000514665 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
USP53-209ENST00000514665 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.96□□□□□ -2.1
USP53-209ENST00000514665 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.1
USP53-209ENST00000514665 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
USP53-209ENST00000514665 KRTAP5-11Q6L8G4 156 aa1.87□□□□□ -2.11
USP53-209ENST00000514665 KRTAP5-7Q6L8G8 165 aa1.81□□□□□ -2.12
USP53-209ENST00000514665 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
USP53-209ENST00000514665 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 177.7 ms