RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SPRR2AP35326 72 aa3.13□□□□□ -1.91
LIMCH1-219ENST00000514096 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
LIMCH1-219ENST00000514096 SPRR5A0A1B0GTR4 108 aa3.07□□□□□ -1.92
LIMCH1-219ENST00000514096 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
LIMCH1-219ENST00000514096 NEBP20929 6669 aa3.06□□□□□ -1.92
LIMCH1-219ENST00000514096 KRTAP10-12P60413 245 aa3.03□□□□□ -1.92
LIMCH1-219ENST00000514096 SPRR2DP22532 72 aa3□□□□□ -1.93
LIMCH1-219ENST00000514096 KRTAP20-1Q3LI63 56 aa2.99□□□□□ -1.93
LIMCH1-219ENST00000514096 LCE3AQ5TA76 89 aa2.95□□□□□ -1.94
LIMCH1-219ENST00000514096 SYNE1Q8NF91 8797 aaKnown RBP2.95□□□□□ -1.94
LIMCH1-219ENST00000514096 KRTAP19-5Q3LI72 72 aa2.94□□□□□ -1.94
LIMCH1-219ENST00000514096 LCE1AQ5T7P2 110 aa2.94□□□□□ -1.94
LIMCH1-219ENST00000514096 KRTAP5-9P26371 169 aa2.91□□□□□ -1.94
LIMCH1-219ENST00000514096 LCE5AQ5TCM9 118 aa2.88□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP4-3Q9BYR4 195 aa2.88□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP2-2Q9BYT5 123 aa2.88□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP4-7Q9BYR0 210 aa2.87□□□□□ -1.95
LIMCH1-219ENST00000514096 LCE3BQ5TA77 95 aa2.87□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP4-9Q9BYQ8 210 aa2.86□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP2-3P0C7H8 128 aa2.84□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP19-7Q3SYF9 63 aa2.84□□□□□ -1.95
LIMCH1-219ENST00000514096 KRTAP2-4Q9BYR9 128 aa2.84□□□□□ -1.95
LIMCH1-219ENST00000514096 MT1EP04732 61 aa2.82□□□□□ -1.96
LIMCH1-219ENST00000514096 KRTAP12-3P60328 96 aa2.8□□□□□ -1.96
LIMCH1-219ENST00000514096 KRTAP19-3Q7Z4W3 81 aa2.79□□□□□ -1.96
LIMCH1-219ENST00000514096 MT4P47944 62 aa2.79□□□□□ -1.96
LIMCH1-219ENST00000514096 KRTAP2-1Q9BYU5 128 aa2.77□□□□□ -1.97
LIMCH1-219ENST00000514096 MT1LQ93083 61 aa2.72□□□□□ -1.97
LIMCH1-219ENST00000514096 MT1GP13640 62 aa2.71□□□□□ -1.98
LIMCH1-219ENST00000514096 MT1MQ8N339 61 aa2.7□□□□□ -1.98
LIMCH1-219ENST00000514096 KRTAP9-4Q9BYQ2 154 aa2.7□□□□□ -1.98
LIMCH1-219ENST00000514096 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
LIMCH1-219ENST00000514096 LOC100996750A0A140TA64 210 aa2.7□□□□□ -1.98
LIMCH1-219ENST00000514096 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
LIMCH1-219ENST00000514096 KRTAP12-4P60329 112 aa2.69□□□□□ -1.98
LIMCH1-219ENST00000514096 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
LIMCH1-219ENST00000514096 KRTAP19-4Q3LI73 84 aa2.68□□□□□ -1.98
LIMCH1-219ENST00000514096 LCE4AQ5TA78 99 aa2.65□□□□□ -1.99
LIMCH1-219ENST00000514096 LCE1DQ5T752 114 aa2.6□□□□□ -1.99
LIMCH1-219ENST00000514096 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
LIMCH1-219ENST00000514096 KRTAP4-6Q9BYQ5 205 aa2.58□□□□□ -2
LIMCH1-219ENST00000514096 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
LIMCH1-219ENST00000514096 LCE3CQ5T5A8 94 aa2.57□□□□□ -2
LIMCH1-219ENST00000514096 KRTAP9-9Q9BYP9 154 aa2.54□□□□□ -2
LIMCH1-219ENST00000514096 PRM1P04553 51 aa2.46□□□□□ -2.02
LIMCH1-219ENST00000514096 KRTAP9-6A8MVA2 160 aa2.42□□□□□ -2.02
LIMCH1-219ENST00000514096 MT3P25713 68 aa2.41□□□□□ -2.02
LIMCH1-219ENST00000514096 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
LIMCH1-219ENST00000514096 KRTAP6-1Q3LI64 71 aa2.38□□□□□ -2.03
LIMCH1-219ENST00000514096 KRTAP20-2Q3LI61 65 aa2.34□□□□□ -2.03
LIMCH1-219ENST00000514096 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
LIMCH1-219ENST00000514096 AHNAK2Q8IVF2 5795 aa2.33□□□□□ -2.04
LIMCH1-219ENST00000514096 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
LIMCH1-219ENST00000514096 KRTAP5-4Q6L8H1 288 aa2.3□□□□□ -2.04
LIMCH1-219ENST00000514096 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
LIMCH1-219ENST00000514096 KRTAP5-5Q701N2 237 aaPredicted RBP2.27□□□□□ -2.05
LIMCH1-219ENST00000514096 MT1AP04731 61 aa2.26□□□□□ -2.05
LIMCH1-219ENST00000514096 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
LIMCH1-219ENST00000514096 MUC5ACP98088 5654 aa2.18□□□□□ -2.06
LIMCH1-219ENST00000514096 KRTAP4-12Q9BQ66 201 aa2.17□□□□□ -2.06
LIMCH1-219ENST00000514096 KRTAP4-11Q9BYQ6 195 aa2.16□□□□□ -2.06
LIMCH1-219ENST00000514096 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
LIMCH1-219ENST00000514096 MUC5BQ9HC84 5762 aaPredicted RBP2.1□□□□□ -2.07
LIMCH1-219ENST00000514096 KRTAP5-8O75690 187 aa2.08□□□□□ -2.08
LIMCH1-219ENST00000514096 KRTAP5-7Q6L8G8 165 aa2.01□□□□□ -2.09
LIMCH1-219ENST00000514096 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
LIMCH1-219ENST00000514096 AHNAKQ09666 5890 aaKnown RBP1.95□□□□□ -2.1
LIMCH1-219ENST00000514096 KRTAP4-2Q9BYR5 136 aa1.9□□□□□ -2.1
LIMCH1-219ENST00000514096 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
LIMCH1-219ENST00000514096 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
LIMCH1-219ENST00000514096 KRTAP4-4Q9BYR3 166 aa1.69□□□□□ -2.14
LIMCH1-219ENST00000514096 PHGR1C9JFL3 82 aa1.46□□□□□ -2.17
LIMCH1-219ENST00000514096 KRTAP5-11Q6L8G4 156 aa1.46□□□□□ -2.18
LIMCH1-219ENST00000514096 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
LIMCH1-219ENST00000514096 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.37□□□□□ -2.19
LIMCH1-219ENST00000514096 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
LIMCH1-219ENST00000514096 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 88.1 ms