RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
SH3RF1-203ENST00000508685 KRTAP19-4Q3LI73 84 aa4.05□□□□□ -1.76
SH3RF1-203ENST00000508685 LCE3CQ5T5A8 94 aa4.04□□□□□ -1.76
SH3RF1-203ENST00000508685 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
SH3RF1-203ENST00000508685 NEBP20929 6669 aa3.93□□□□□ -1.78
SH3RF1-203ENST00000508685 MUC12Q9UKN1 5478 aa3.93□□□□□ -1.78
SH3RF1-203ENST00000508685 KRTAP5-9P26371 169 aa3.92□□□□□ -1.78
SH3RF1-203ENST00000508685 MT1EP04732 61 aa3.9□□□□□ -1.79
SH3RF1-203ENST00000508685 MDN1Q9NU22 5596 aa3.87□□□□□ -1.79
SH3RF1-203ENST00000508685 MT1LQ93083 61 aa3.85□□□□□ -1.79
SH3RF1-203ENST00000508685 SPRR2FQ96RM1 72 aa3.84□□□□□ -1.79
SH3RF1-203ENST00000508685 KRTAP4-7Q9BYR0 210 aa3.83□□□□□ -1.8
SH3RF1-203ENST00000508685 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
SH3RF1-203ENST00000508685 KRTAP2-3P0C7H8 128 aa3.78□□□□□ -1.8
SH3RF1-203ENST00000508685 KRTAP2-4Q9BYR9 128 aa3.78□□□□□ -1.8
SH3RF1-203ENST00000508685 KRTAP2-1Q9BYU5 128 aa3.78□□□□□ -1.8
SH3RF1-203ENST00000508685 SPRR2EP22531 72 aa3.76□□□□□ -1.81
SH3RF1-203ENST00000508685 SPRR2BP35325 72 aa3.76□□□□□ -1.81
SH3RF1-203ENST00000508685 SPRR2AP35326 72 aa3.76□□□□□ -1.81
SH3RF1-203ENST00000508685 LOC100996750A0A140TA64 210 aa3.73□□□□□ -1.81
SH3RF1-203ENST00000508685 KRTAP4-6Q9BYQ5 205 aa3.73□□□□□ -1.81
SH3RF1-203ENST00000508685 LCE1AQ5T7P2 110 aa3.71□□□□□ -1.81
SH3RF1-203ENST00000508685 KRTAP20-1Q3LI63 56 aa3.71□□□□□ -1.82
SH3RF1-203ENST00000508685 LCE4AQ5TA78 99 aa3.71□□□□□ -1.82
SH3RF1-203ENST00000508685 KRTAP19-3Q7Z4W3 81 aa3.7□□□□□ -1.82
SH3RF1-203ENST00000508685 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
SH3RF1-203ENST00000508685 MT1MQ8N339 61 aa3.66□□□□□ -1.82
SH3RF1-203ENST00000508685 MT1GP13640 62 aa3.66□□□□□ -1.82
SH3RF1-203ENST00000508685 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
SH3RF1-203ENST00000508685 DSTQ03001 7570 aaKnown RBP3.66□□□□□ -1.82
SH3RF1-203ENST00000508685 SPRR2DP22532 72 aa3.63□□□□□ -1.83
SH3RF1-203ENST00000508685 LCE5AQ5TCM9 118 aa3.63□□□□□ -1.83
SH3RF1-203ENST00000508685 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
SH3RF1-203ENST00000508685 KRTAP9-9Q9BYP9 154 aa3.6□□□□□ -1.83
SH3RF1-203ENST00000508685 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
SH3RF1-203ENST00000508685 LCE3BQ5TA77 95 aa3.52□□□□□ -1.85
SH3RF1-203ENST00000508685 KRTAP12-4P60329 112 aa3.32□□□□□ -1.88
SH3RF1-203ENST00000508685 KRTAP5-5Q701N2 237 aaPredicted RBP3.28□□□□□ -1.88
SH3RF1-203ENST00000508685 MT1AP04731 61 aa3.27□□□□□ -1.89
SH3RF1-203ENST00000508685 KRTAP6-1Q3LI64 71 aa3.27□□□□□ -1.89
SH3RF1-203ENST00000508685 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
SH3RF1-203ENST00000508685 KRTAP4-9Q9BYQ8 210 aa3.24□□□□□ -1.89
SH3RF1-203ENST00000508685 SYNE1Q8NF91 8797 aaKnown RBP3.23□□□□□ -1.89
SH3RF1-203ENST00000508685 HMCN1Q96RW7 5635 aa3.17□□□□□ -1.9
SH3RF1-203ENST00000508685 KRTAP5-4Q6L8H1 288 aa3.17□□□□□ -1.9
SH3RF1-203ENST00000508685 MT4P47944 62 aa3.16□□□□□ -1.9
SH3RF1-203ENST00000508685 GPR98Q8WXG9 6306 aa3.14□□□□□ -1.91
SH3RF1-203ENST00000508685 LCE3DQ9BYE3 92 aa3.12□□□□□ -1.91
SH3RF1-203ENST00000508685 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
SH3RF1-203ENST00000508685 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
SH3RF1-203ENST00000508685 AHNAK2Q8IVF2 5795 aa3.03□□□□□ -1.92
SH3RF1-203ENST00000508685 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
SH3RF1-203ENST00000508685 OBSCNQ5VST9 7968 aa2.98□□□□□ -1.93
SH3RF1-203ENST00000508685 KRTAP6-2Q3LI66 62 aa2.98□□□□□ -1.93
SH3RF1-203ENST00000508685 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
SH3RF1-203ENST00000508685 MT3P25713 68 aa2.93□□□□□ -1.94
SH3RF1-203ENST00000508685 PRM1P04553 51 aa2.91□□□□□ -1.94
SH3RF1-203ENST00000508685 KRTAP5-3Q6L8H2 238 aa2.9□□□□□ -1.95
SH3RF1-203ENST00000508685 KRTAP5-10Q6L8G5 202 aa2.88□□□□□ -1.95
SH3RF1-203ENST00000508685 KRTAP5-2Q701N4 177 aa2.8□□□□□ -1.96
SH3RF1-203ENST00000508685 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SH3RF1-203ENST00000508685 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
SH3RF1-203ENST00000508685 KRTAP5-8O75690 187 aa2.6□□□□□ -1.99
SH3RF1-203ENST00000508685 MUC5ACP98088 5654 aa2.52□□□□□ -2.01
SH3RF1-203ENST00000508685 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
SH3RF1-203ENST00000508685 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
SH3RF1-203ENST00000508685 KRTAP5-1Q6L8H4 278 aa2.49□□□□□ -2.01
SH3RF1-203ENST00000508685 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
SH3RF1-203ENST00000508685 LCE1BQ5T7P3 118 aa2.41□□□□□ -2.02
SH3RF1-203ENST00000508685 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
SH3RF1-203ENST00000508685 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.17□□□□□ -2.06
SH3RF1-203ENST00000508685 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
SH3RF1-203ENST00000508685 KRTAP5-11Q6L8G4 156 aa2.08□□□□□ -2.08
SH3RF1-203ENST00000508685 KRTAP4-4Q9BYR3 166 aa1.94□□□□□ -2.1
SH3RF1-203ENST00000508685 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
SH3RF1-203ENST00000508685 MUC19Q7Z5P9 8384 aa1.78□□□□□ -2.12
SH3RF1-203ENST00000508685 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
SH3RF1-203ENST00000508685 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 6.4 ms