RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 Q5VSD8 79 aa1.79□□□□□ -2.12
SF3B1-212ENST00000496458 PRLHP81277 87 aa1.78□□□□□ -2.12
SF3B1-212ENST00000496458 C10orf95Q9H7T3 257 aa1.78□□□□□ -2.12
SF3B1-212ENST00000496458 FAT3Q8TDW7 4589 aa1.77□□□□□ -2.13
SF3B1-212ENST00000496458 PKHD1L1Q86WI1 4243 aa1.77□□□□□ -2.13
SF3B1-212ENST00000496458 SPINK1P00995 79 aa1.75□□□□□ -2.13
SF3B1-212ENST00000496458 KRTAP10-4P60372 401 aaPredicted RBP1.75□□□□□ -2.13
SF3B1-212ENST00000496458 TNXBP22105 4242 aa1.73□□□□□ -2.13
SF3B1-212ENST00000496458 SPINK6Q6UWN8 80 aa1.72□□□□□ -2.13
SF3B1-212ENST00000496458 S4R3F8 94 aa1.72□□□□□ -2.13
SF3B1-212ENST00000496458 HMCN2Q8NDA2 5059 aa1.7□□□□□ -2.14
SF3B1-212ENST00000496458 UBR4Q5T4S7 5183 aa1.7□□□□□ -2.14
SF3B1-212ENST00000496458 LRP2P98164 4655 aa1.7□□□□□ -2.14
SF3B1-212ENST00000496458 MT1HL1P0DM35 61 aa1.69□□□□□ -2.14
SF3B1-212ENST00000496458 RNF213Q63HN8 5207 aa1.67□□□□□ -2.14
SF3B1-212ENST00000496458 A0A0D9SG42 100 aa1.65□□□□□ -2.15
SF3B1-212ENST00000496458 LPAP08519 4548 aa1.65□□□□□ -2.15
SF3B1-212ENST00000496458 M0QZ58 72 aa1.63□□□□□ -2.15
SF3B1-212ENST00000496458 MUC2Q02817 5179 aa1.61□□□□□ -2.15
SF3B1-212ENST00000496458 RPS29P62273 56 aaKnown RBP1.57□□□□□ -2.16
SF3B1-212ENST00000496458 FAT4Q6V0I7 4981 aa1.56□□□□□ -2.16
SF3B1-212ENST00000496458 C9orf92A6NGG3 77 aa1.56□□□□□ -2.16
SF3B1-212ENST00000496458 MUC17Q685J3 4493 aa1.54□□□□□ -2.16
SF3B1-212ENST00000496458 FLGP20930 4061 aaPredicted RBP1.52□□□□□ -2.17
SF3B1-212ENST00000496458 KRTAP19-2Q3LHN2 52 aa1.45□□□□□ -2.18
SF3B1-212ENST00000496458 M0R2T5 61 aa1.44□□□□□ -2.18
SF3B1-212ENST00000496458 TNP1P09430 55 aa1.44□□□□□ -2.18
SF3B1-212ENST00000496458 FSIP2Q5CZC0 6907 aa1.43□□□□□ -2.18
SF3B1-212ENST00000496458 MT1HP80294 61 aa1.43□□□□□ -2.18
SF3B1-212ENST00000496458 USH2AO75445 5202 aa1.38□□□□□ -2.19
SF3B1-212ENST00000496458 SSPOA2VEC9 5147 aa1.36□□□□□ -2.19
SF3B1-212ENST00000496458 MT2AP02795 61 aa1.35□□□□□ -2.19
SF3B1-212ENST00000496458 MT1FP04733 61 aa1.35□□□□□ -2.19
SF3B1-212ENST00000496458 KRTAP8-1Q8IUC2 63 aa1.3□□□□□ -2.2
SF3B1-212ENST00000496458 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
SF3B1-212ENST00000496458 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
SF3B1-212ENST00000496458 KRTAP2-3P0C7H8 128 aa1.26□□□□□ -2.21
SF3B1-212ENST00000496458 KRTAP2-4Q9BYR9 128 aa1.26□□□□□ -2.21
SF3B1-212ENST00000496458 KRTAP2-1Q9BYU5 128 aa1.26□□□□□ -2.21
SF3B1-212ENST00000496458 SYNE2Q8WXH0 6885 aaKnown RBP1.25□□□□□ -2.21
SF3B1-212ENST00000496458 SPRR2GQ9BYE4 73 aa1.25□□□□□ -2.21
SF3B1-212ENST00000496458 MACF1Q9UPN3 7388 aaKnown RBP1.25□□□□□ -2.21
SF3B1-212ENST00000496458 MT1BP07438 61 aa1.24□□□□□ -2.21
SF3B1-212ENST00000496458 KRTAP19-8Q3LI54 63 aa1.24□□□□□ -2.21
SF3B1-212ENST00000496458 KRTAP19-6Q3LI70 58 aa1.24□□□□□ -2.21
SF3B1-212ENST00000496458 KMT2DO14686 5537 aa1.19□□□□□ -2.22
SF3B1-212ENST00000496458 MT1XP80297 61 aa1.18□□□□□ -2.22
SF3B1-212ENST00000496458 MUC12Q9UKN1 5478 aa1.17□□□□□ -2.22
SF3B1-212ENST00000496458 MDN1Q9NU22 5596 aa1.16□□□□□ -2.22
SF3B1-212ENST00000496458 NEBP20929 6669 aa1.15□□□□□ -2.23
SF3B1-212ENST00000496458 SPRR2FQ96RM1 72 aa1.12□□□□□ -2.23
SF3B1-212ENST00000496458 KRTAP19-5Q3LI72 72 aa1.1□□□□□ -2.23
SF3B1-212ENST00000496458 SPRR2EP22531 72 aa1.09□□□□□ -2.23
SF3B1-212ENST00000496458 SPRR2BP35325 72 aa1.09□□□□□ -2.23
SF3B1-212ENST00000496458 SPRR2AP35326 72 aa1.09□□□□□ -2.23
SF3B1-212ENST00000496458 DSTQ03001 7570 aaKnown RBP1.07□□□□□ -2.24
SF3B1-212ENST00000496458 KRTAP20-1Q3LI63 56 aa1.06□□□□□ -2.24
SF3B1-212ENST00000496458 SPRR2DP22532 72 aa1.05□□□□□ -2.24
SF3B1-212ENST00000496458 KRTAP19-7Q3SYF9 63 aa1.04□□□□□ -2.24
SF3B1-212ENST00000496458 MT1EP04732 61 aa1.03□□□□□ -2.24
SF3B1-212ENST00000496458 PRM1P04553 51 aa1.02□□□□□ -2.25
SF3B1-212ENST00000496458 MT1AP04731 61 aa1.02□□□□□ -2.25
SF3B1-212ENST00000496458 KRTAP19-3Q7Z4W3 81 aa1.02□□□□□ -2.25
SF3B1-212ENST00000496458 MT1GP13640 62 aa1□□□□□ -2.25
SF3B1-212ENST00000496458 MT1LQ93083 61 aa1□□□□□ -2.25
SF3B1-212ENST00000496458 MT1MQ8N339 61 aa0.99□□□□□ -2.25
SF3B1-212ENST00000496458 MT4P47944 62 aa0.93□□□□□ -2.26
SF3B1-212ENST00000496458 GPR98Q8WXG9 6306 aa0.93□□□□□ -2.26
SF3B1-212ENST00000496458 AHNAK2Q8IVF2 5795 aa0.91□□□□□ -2.26
SF3B1-212ENST00000496458 MUC5BQ9HC84 5762 aaPredicted RBP0.9□□□□□ -2.27
SF3B1-212ENST00000496458 AHNAKQ09666 5890 aaKnown RBP0.9□□□□□ -2.27
SF3B1-212ENST00000496458 KRTAP6-2Q3LI66 62 aa0.89□□□□□ -2.27
SF3B1-212ENST00000496458 SYNE1Q8NF91 8797 aaKnown RBP0.87□□□□□ -2.27
SF3B1-212ENST00000496458 KRTAP20-2Q3LI61 65 aa0.85□□□□□ -2.27
SF3B1-212ENST00000496458 KRTAP6-1Q3LI64 71 aa0.85□□□□□ -2.27
SF3B1-212ENST00000496458 MUC5ACP98088 5654 aa0.76□□□□□ -2.29
SF3B1-212ENST00000496458 KRTAP21-1Q3LI58 79 aa0.75□□□□□ -2.29
SF3B1-212ENST00000496458 PHGR1C9JFL3 82 aa0.55□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 9.1 ms