RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 INE1O15225 51 aa3.68□□□□□ -1.82
HDAC6-234ENST00000493923 MT1BP07438 61 aa3.68□□□□□ -1.82
HDAC6-234ENST00000493923 MUC12Q9UKN1 5478 aa3.62□□□□□ -1.83
HDAC6-234ENST00000493923 KRTAP19-8Q3LI54 63 aa3.62□□□□□ -1.83
HDAC6-234ENST00000493923 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
HDAC6-234ENST00000493923 SPRR2GQ9BYE4 73 aa3.6□□□□□ -1.83
HDAC6-234ENST00000493923 R4GN34 69 aa3.6□□□□□ -1.83
HDAC6-234ENST00000493923 NEBP20929 6669 aa3.6□□□□□ -1.83
HDAC6-234ENST00000493923 KRTAP10-5P60370 271 aa3.57□□□□□ -1.84
HDAC6-234ENST00000493923 KMT2DO14686 5537 aa3.54□□□□□ -1.84
HDAC6-234ENST00000493923 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
HDAC6-234ENST00000493923 LCE1AQ5T7P2 110 aa3.52□□□□□ -1.85
HDAC6-234ENST00000493923 KRTAP5-9P26371 169 aa3.49□□□□□ -1.85
HDAC6-234ENST00000493923 TNP1P09430 55 aa3.48□□□□□ -1.85
HDAC6-234ENST00000493923 KRTAP20-1Q3LI63 56 aa3.46□□□□□ -1.86
HDAC6-234ENST00000493923 MT1XP80297 61 aa3.41□□□□□ -1.86
HDAC6-234ENST00000493923 KRTAP10-7P60409 375 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-234ENST00000493923 SPRR2FQ96RM1 72 aa3.36□□□□□ -1.87
HDAC6-234ENST00000493923 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
HDAC6-234ENST00000493923 SPRR2EP22531 72 aa3.33□□□□□ -1.88
HDAC6-234ENST00000493923 SPRR2BP35325 72 aa3.33□□□□□ -1.88
HDAC6-234ENST00000493923 SPRR2AP35326 72 aa3.33□□□□□ -1.88
HDAC6-234ENST00000493923 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.33□□□□□ -1.88
HDAC6-234ENST00000493923 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
HDAC6-234ENST00000493923 KRTAP8-1Q8IUC2 63 aa3.3□□□□□ -1.88
HDAC6-234ENST00000493923 KRTAP2-2Q9BYT5 123 aa3.3□□□□□ -1.88
HDAC6-234ENST00000493923 KRTAP5-11Q6L8G4 156 aa3.29□□□□□ -1.88
HDAC6-234ENST00000493923 SPRR2DP22532 72 aa3.22□□□□□ -1.89
HDAC6-234ENST00000493923 KRTAP10-12P60413 245 aa3.21□□□□□ -1.9
HDAC6-234ENST00000493923 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
HDAC6-234ENST00000493923 KRTAP2-1Q9BYU5 128 aa3.21□□□□□ -1.9
HDAC6-234ENST00000493923 MT3P25713 68 aa3.11□□□□□ -1.91
HDAC6-234ENST00000493923 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
HDAC6-234ENST00000493923 LCE3AQ5TA76 89 aa3.07□□□□□ -1.92
HDAC6-234ENST00000493923 KRTAP19-7Q3SYF9 63 aa3.06□□□□□ -1.92
HDAC6-234ENST00000493923 MT1EP04732 61 aa3.02□□□□□ -1.93
HDAC6-234ENST00000493923 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
HDAC6-234ENST00000493923 KRTAP12-3P60328 96 aa2.98□□□□□ -1.93
HDAC6-234ENST00000493923 KRTAP19-3Q7Z4W3 81 aa2.98□□□□□ -1.93
HDAC6-234ENST00000493923 KRTAP19-5Q3LI72 72 aa2.95□□□□□ -1.94
HDAC6-234ENST00000493923 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
HDAC6-234ENST00000493923 KRTAP4-3Q9BYR4 195 aa2.89□□□□□ -1.95
HDAC6-234ENST00000493923 AHNAK2Q8IVF2 5795 aa2.88□□□□□ -1.95
HDAC6-234ENST00000493923 KRTAP5-1Q6L8H4 278 aa2.88□□□□□ -1.95
HDAC6-234ENST00000493923 MT1MQ8N339 61 aa2.88□□□□□ -1.95
HDAC6-234ENST00000493923 MT1GP13640 62 aa2.87□□□□□ -1.95
HDAC6-234ENST00000493923 MT1LQ93083 61 aa2.87□□□□□ -1.95
HDAC6-234ENST00000493923 MT4P47944 62 aa2.85□□□□□ -1.95
HDAC6-234ENST00000493923 LCE3CQ5T5A8 94 aa2.83□□□□□ -1.96
HDAC6-234ENST00000493923 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
HDAC6-234ENST00000493923 KRTAP5-4Q6L8H1 288 aa2.79□□□□□ -1.96
HDAC6-234ENST00000493923 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
HDAC6-234ENST00000493923 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
HDAC6-234ENST00000493923 KRTAP5-10Q6L8G5 202 aa2.74□□□□□ -1.97
HDAC6-234ENST00000493923 KRTAP5-5Q701N2 237 aaPredicted RBP2.66□□□□□ -1.98
HDAC6-234ENST00000493923 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
HDAC6-234ENST00000493923 KRTAP5-7Q6L8G8 165 aa2.62□□□□□ -1.99
HDAC6-234ENST00000493923 SYNE1Q8NF91 8797 aaKnown RBP2.61□□□□□ -1.99
HDAC6-234ENST00000493923 KRTAP12-4P60329 112 aa2.53□□□□□ -2
HDAC6-234ENST00000493923 KRTAP6-1Q3LI64 71 aa2.46□□□□□ -2.02
HDAC6-234ENST00000493923 KRTAP5-2Q701N4 177 aa2.44□□□□□ -2.02
HDAC6-234ENST00000493923 OBSCNQ5VST9 7968 aa2.43□□□□□ -2.02
HDAC6-234ENST00000493923 MT1AP04731 61 aa2.42□□□□□ -2.02
HDAC6-234ENST00000493923 AHNAKQ09666 5890 aaKnown RBP2.39□□□□□ -2.03
HDAC6-234ENST00000493923 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
HDAC6-234ENST00000493923 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
HDAC6-234ENST00000493923 KRTAP6-2Q3LI66 62 aa2.35□□□□□ -2.03
HDAC6-234ENST00000493923 LCE3EQ5T5B0 92 aa2.35□□□□□ -2.03
HDAC6-234ENST00000493923 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
HDAC6-234ENST00000493923 PRM1P04553 51 aa2.28□□□□□ -2.04
HDAC6-234ENST00000493923 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
HDAC6-234ENST00000493923 LCE1CQ5T751 118 aa2.09□□□□□ -2.07
HDAC6-234ENST00000493923 LCE1BQ5T7P3 118 aa2.09□□□□□ -2.07
HDAC6-234ENST00000493923 MUC19Q7Z5P9 8384 aa1.65□□□□□ -2.14
HDAC6-234ENST00000493923 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
HDAC6-234ENST00000493923 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
HDAC6-234ENST00000493923 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
HDAC6-234ENST00000493923 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 182.4 ms