RNA–Protein interactions for RNA: ENST00000491541.1

SREBF2-208, Transcript of sterol regulatory element binding transcription factor 2, human

TSL 1 (best)

Gene SREBF2, Length 4,043 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF2-208	ENST00000491541	KRTAP4-7	Q9BYR0	210 aa		3.54	□□□□□ -1.84
SREBF2-208	ENST00000491541	KMT2D	O14686	5537 aa		3.54	□□□□□ -1.84
SREBF2-208	ENST00000491541	KRTAP4-8	A0A0G2JLE6	195 aa		3.51	□□□□□ -1.85
SREBF2-208	ENST00000491541	KRTAP4-8	Q9BYQ9	185 aa		3.51	□□□□□ -1.85
SREBF2-208	ENST00000491541	LCE4A	Q5TA78	99 aa		3.5	□□□□□ -1.85
SREBF2-208	ENST00000491541	MT1L	Q93083	61 aa		3.5	□□□□□ -1.85
SREBF2-208	ENST00000491541	SPRR2F	Q96RM1	72 aa		3.47	□□□□□ -1.85
SREBF2-208	ENST00000491541	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.46	□□□□□ -1.86
SREBF2-208	ENST00000491541	MT1A	P04731	61 aa		3.44	□□□□□ -1.86
SREBF2-208	ENST00000491541	SSPO	A2VEC9	5147 aa		3.44	□□□□□ -1.86
SREBF2-208	ENST00000491541	USH2A	O75445	5202 aa		3.42	□□□□□ -1.86
SREBF2-208	ENST00000491541	KRTAP12-4	P60329	112 aa		3.38	□□□□□ -1.87
SREBF2-208	ENST00000491541	DST	Q03001	7570 aa	Known RBP	3.38	□□□□□ -1.87
SREBF2-208	ENST00000491541	KRTAP19-6	Q3LI70	58 aa		3.3	□□□□□ -1.88
SREBF2-208	ENST00000491541	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.29	□□□□□ -1.88
SREBF2-208	ENST00000491541	KRTAP20-1	Q3LI63	56 aa		3.28	□□□□□ -1.88
SREBF2-208	ENST00000491541	LOC100996750	A0A140TA64	210 aa		3.28	□□□□□ -1.89
SREBF2-208	ENST00000491541	GPR98	Q8WXG9	6306 aa		3.27	□□□□□ -1.89
SREBF2-208	ENST00000491541	LCE3B	Q5TA77	95 aa		3.27	□□□□□ -1.89
SREBF2-208	ENST00000491541	MT1G	P13640	62 aa		3.26	□□□□□ -1.89
SREBF2-208	ENST00000491541	MACF1	Q9UPN3	7388 aa	Known RBP	3.22	□□□□□ -1.89
SREBF2-208	ENST00000491541	KRTAP4-3	Q9BYR4	195 aa		3.22	□□□□□ -1.89
SREBF2-208	ENST00000491541	KRTAP9-4	Q9BYQ2	154 aa		3.21	□□□□□ -1.9
SREBF2-208	ENST00000491541	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.2	□□□□□ -1.9
SREBF2-208	ENST00000491541	MT1M	Q8N339	61 aa		3.16	□□□□□ -1.9
SREBF2-208	ENST00000491541	LCE5A	Q5TCM9	118 aa		3.16	□□□□□ -1.9
SREBF2-208	ENST00000491541	SPRR2E	P22531	72 aa		3.15	□□□□□ -1.91
SREBF2-208	ENST00000491541	SPRR2B	P35325	72 aa		3.15	□□□□□ -1.91
SREBF2-208	ENST00000491541	SPRR2A	P35326	72 aa		3.15	□□□□□ -1.91
SREBF2-208	ENST00000491541	NEB	P20929	6669 aa		3.13	□□□□□ -1.91
SREBF2-208	ENST00000491541	KRTAP4-9	Q9BYQ8	210 aa		3.13	□□□□□ -1.91
SREBF2-208	ENST00000491541	KRTAP19-3	Q7Z4W3	81 aa		3.12	□□□□□ -1.91
SREBF2-208	ENST00000491541	SYNE2	Q8WXH0	6885 aa	Known RBP	3.11	□□□□□ -1.91
SREBF2-208	ENST00000491541	KRTAP4-6	Q9BYQ5	205 aa		3.1	□□□□□ -1.91
SREBF2-208	ENST00000491541	KRTAP9-9	Q9BYP9	154 aa		3.09	□□□□□ -1.92
SREBF2-208	ENST00000491541	KRTAP6-3	Q3LI67	103 aa		3.04	□□□□□ -1.92
SREBF2-208	ENST00000491541	PRM1	P04553	51 aa		3.04	□□□□□ -1.92
SREBF2-208	ENST00000491541	KRTAP4-12	Q9BQ66	201 aa		3.04	□□□□□ -1.92
SREBF2-208	ENST00000491541	MUC12	Q9UKN1	5478 aa		3.03	□□□□□ -1.92
SREBF2-208	ENST00000491541	SPRR2D	P22532	72 aa		3.01	□□□□□ -1.93
SREBF2-208	ENST00000491541	LCE3D	Q9BYE3	92 aa		2.99	□□□□□ -1.93
SREBF2-208	ENST00000491541	LCE3E	Q5T5B0	92 aa		2.96	□□□□□ -1.94
SREBF2-208	ENST00000491541	KRTAP2-2	Q9BYT5	123 aa		2.96	□□□□□ -1.94
SREBF2-208	ENST00000491541	KRTAP5-9	P26371	169 aa		2.89	□□□□□ -1.95
SREBF2-208	ENST00000491541	LCE1D	Q5T752	114 aa		2.86	□□□□□ -1.95
SREBF2-208	ENST00000491541	MUC19	Q7Z5P9	8384 aa		2.85	□□□□□ -1.95
SREBF2-208	ENST00000491541	KRTAP6-1	Q3LI64	71 aa		2.83	□□□□□ -1.96
SREBF2-208	ENST00000491541	MT4	P47944	62 aa		2.8	□□□□□ -1.96
SREBF2-208	ENST00000491541	KRTAP6-2	Q3LI66	62 aa		2.77	□□□□□ -1.97
SREBF2-208	ENST00000491541	LCE1A	Q5T7P2	110 aa		2.76	□□□□□ -1.97
SREBF2-208	ENST00000491541	MT3	P25713	68 aa		2.73	□□□□□ -1.97
SREBF2-208	ENST00000491541	KRTAP5-4	Q6L8H1	288 aa		2.71	□□□□□ -1.98
SREBF2-208	ENST00000491541	MDN1	Q9NU22	5596 aa		2.69	□□□□□ -1.98
SREBF2-208	ENST00000491541	KRTAP5-7	Q6L8G8	165 aa		2.65	□□□□□ -1.98
SREBF2-208	ENST00000491541	KRTAP5-2	Q701N4	177 aa		2.65	□□□□□ -1.98
SREBF2-208	ENST00000491541	KRTAP4-11	Q9BYQ6	195 aa		2.65	□□□□□ -1.99
SREBF2-208	ENST00000491541	LCE1F	Q5T754	118 aa		2.63	□□□□□ -1.99
SREBF2-208	ENST00000491541	LCE1B	Q5T7P3	118 aa		2.62	□□□□□ -1.99
SREBF2-208	ENST00000491541	AHNAK	Q09666	5890 aa	Known RBP	2.6	□□□□□ -1.99
SREBF2-208	ENST00000491541	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.58	□□□□□ -2
SREBF2-208	ENST00000491541	LCE1E	Q5T753	118 aa		2.58	□□□□□ -2
SREBF2-208	ENST00000491541	KRTAP5-1	Q6L8H4	278 aa		2.53	□□□□□ -2
SREBF2-208	ENST00000491541	AHNAK2	Q8IVF2	5795 aa		2.53	□□□□□ -2.01
SREBF2-208	ENST00000491541	KRTAP5-10	Q6L8G5	202 aa		2.51	□□□□□ -2.01
SREBF2-208	ENST00000491541	KRTAP4-2	Q9BYR5	136 aa		2.48	□□□□□ -2.01
SREBF2-208	ENST00000491541	HMCN1	Q96RW7	5635 aa		2.41	□□□□□ -2.02
SREBF2-208	ENST00000491541	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.39	□□□□□ -2.03
SREBF2-208	ENST00000491541	KRTAP5-3	Q6L8H2	238 aa		2.32	□□□□□ -2.04
SREBF2-208	ENST00000491541	KRTAP21-1	Q3LI58	79 aa		2.22	□□□□□ -2.05
SREBF2-208	ENST00000491541	LCE1C	Q5T751	118 aa		2.21	□□□□□ -2.06
SREBF2-208	ENST00000491541	MUC5AC	P98088	5654 aa		2.21	□□□□□ -2.06
SREBF2-208	ENST00000491541	KRTAP20-2	Q3LI61	65 aa		2.17	□□□□□ -2.06
SREBF2-208	ENST00000491541	KRTAP5-8	O75690	187 aa		2.11	□□□□□ -2.07
SREBF2-208	ENST00000491541	KRTAP21-2	Q3LI59	83 aa		2.06	□□□□□ -2.08
SREBF2-208	ENST00000491541	KRTAP4-4	Q9BYR3	166 aa		2	□□□□□ -2.09
SREBF2-208	ENST00000491541	KRTAP5-11	Q6L8G4	156 aa		1.9	□□□□□ -2.1
SREBF2-208	ENST00000491541	PHGR1	C9JFL3	82 aa		1.59	□□□□□ -2.16
SREBF2-208	ENST00000491541	MUC16	Q8WXI7	14507 aa		1.29	□□□□□ -2.2

Retrieved 78 of 20,778 RNA–protein pairs in 89.3 ms