RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 KRTAP19-7Q3SYF9 63 aa8.38□□□□□ -1.07
USF3-203ENST00000491165 SPRR2FQ96RM1 72 aa8.36□□□□□ -1.07
USF3-203ENST00000491165 KRTAP19-5Q3LI72 72 aa8.35□□□□□ -1.07
USF3-203ENST00000491165 MDN1Q9NU22 5596 aa8.28□□□□□ -1.08
USF3-203ENST00000491165 MT1EP04732 61 aa8.22□□□□□ -1.09
USF3-203ENST00000491165 LCE3CQ5T5A8 94 aa8.17□□□□□ -1.1
USF3-203ENST00000491165 INE1O15225 51 aa8.14□□□□□ -1.11
USF3-203ENST00000491165 LCE1AQ5T7P2 110 aa8.06□□□□□ -1.12
USF3-203ENST00000491165 SPRR2EP22531 72 aa8.02□□□□□ -1.13
USF3-203ENST00000491165 SPRR2BP35325 72 aa8.02□□□□□ -1.13
USF3-203ENST00000491165 SPRR2AP35326 72 aa8.02□□□□□ -1.13
USF3-203ENST00000491165 MT1LQ93083 61 aa7.99□□□□□ -1.13
USF3-203ENST00000491165 KRTAP19-3Q7Z4W3 81 aa7.96□□□□□ -1.13
USF3-203ENST00000491165 NEBP20929 6669 aa7.93□□□□□ -1.14
USF3-203ENST00000491165 LCE5AQ5TCM9 118 aa7.9□□□□□ -1.14
USF3-203ENST00000491165 KRTAP9-6A8MVA2 160 aa7.84□□□□□ -1.15
USF3-203ENST00000491165 MT1GP13640 62 aa7.82□□□□□ -1.16
USF3-203ENST00000491165 KRTAP19-4Q3LI73 84 aa7.78□□□□□ -1.16
USF3-203ENST00000491165 KRTAP4-7Q9BYR0 210 aa7.78□□□□□ -1.16
USF3-203ENST00000491165 MT1MQ8N339 61 aa7.76□□□□□ -1.17
USF3-203ENST00000491165 DSTQ03001 7570 aaKnown RBP7.74□□□□□ -1.17
USF3-203ENST00000491165 SPRR2DP22532 72 aa7.72□□□□□ -1.17
USF3-203ENST00000491165 KRTAP4-3Q9BYR4 195 aa7.68□□□□□ -1.18
USF3-203ENST00000491165 KRTAP2-3P0C7H8 128 aa7.62□□□□□ -1.19
USF3-203ENST00000491165 KRTAP2-4Q9BYR9 128 aa7.62□□□□□ -1.19
USF3-203ENST00000491165 KRTAP2-1Q9BYU5 128 aa7.62□□□□□ -1.19
USF3-203ENST00000491165 LCE3BQ5TA77 95 aa7.46□□□□□ -1.21
USF3-203ENST00000491165 KRTAP20-1Q3LI63 56 aa7.4□□□□□ -1.23
USF3-203ENST00000491165 LOC100996750A0A140TA64 210 aa7.32□□□□□ -1.24
USF3-203ENST00000491165 KRTAP2-2Q9BYT5 123 aa7.22□□□□□ -1.25
USF3-203ENST00000491165 KRTAP5-5Q701N2 237 aaPredicted RBP7.07□□□□□ -1.28
USF3-203ENST00000491165 KRTAP5-4Q6L8H1 288 aa6.92□□□□□ -1.3
USF3-203ENST00000491165 KRTAP4-9Q9BYQ8 210 aa6.84□□□□□ -1.31
USF3-203ENST00000491165 LCE4AQ5TA78 99 aa6.8□□□□□ -1.32
USF3-203ENST00000491165 SYNE1Q8NF91 8797 aaKnown RBP6.8□□□□□ -1.32
USF3-203ENST00000491165 KRTAP6-1Q3LI64 71 aa6.77□□□□□ -1.33
USF3-203ENST00000491165 MT4P47944 62 aa6.76□□□□□ -1.33
USF3-203ENST00000491165 MT1AP04731 61 aa6.76□□□□□ -1.33
USF3-203ENST00000491165 KRTAP12-4P60329 112 aa6.73□□□□□ -1.33
USF3-203ENST00000491165 LCE1DQ5T752 114 aa6.72□□□□□ -1.33
USF3-203ENST00000491165 KRTAP4-6Q9BYQ5 205 aa6.71□□□□□ -1.34
USF3-203ENST00000491165 HMCN1Q96RW7 5635 aa6.67□□□□□ -1.34
USF3-203ENST00000491165 KRTAP20-2Q3LI61 65 aa6.49□□□□□ -1.37
USF3-203ENST00000491165 KRTAP9-4Q9BYQ2 154 aa6.46□□□□□ -1.37
USF3-203ENST00000491165 LCE3DQ9BYE3 92 aa6.3□□□□□ -1.4
USF3-203ENST00000491165 KRTAP6-2Q3LI66 62 aa6.29□□□□□ -1.4
USF3-203ENST00000491165 KRTAP5-3Q6L8H2 238 aa6.29□□□□□ -1.4
USF3-203ENST00000491165 LCE3EQ5T5B0 92 aa6.23□□□□□ -1.41
USF3-203ENST00000491165 KRTAP5-2Q701N4 177 aa6.21□□□□□ -1.42
USF3-203ENST00000491165 MT3P25713 68 aa6.11□□□□□ -1.43
USF3-203ENST00000491165 OBSCNQ5VST9 7968 aa6.07□□□□□ -1.44
USF3-203ENST00000491165 AHNAK2Q8IVF2 5795 aa6.02□□□□□ -1.45
USF3-203ENST00000491165 PRM1P04553 51 aa5.95□□□□□ -1.46
USF3-203ENST00000491165 KRTAP5-10Q6L8G5 202 aa5.82□□□□□ -1.48
USF3-203ENST00000491165 KRTAP4-11Q9BYQ6 195 aa5.72□□□□□ -1.49
USF3-203ENST00000491165 GPR98Q8WXG9 6306 aa5.68□□□□□ -1.5
USF3-203ENST00000491165 KRTAP5-8O75690 187 aa5.54□□□□□ -1.52
USF3-203ENST00000491165 KRTAP5-1Q6L8H4 278 aa5.46□□□□□ -1.54
USF3-203ENST00000491165 LCE1EQ5T753 118 aa5.41□□□□□ -1.54
USF3-203ENST00000491165 KRTAP5-7Q6L8G8 165 aa5.41□□□□□ -1.54
USF3-203ENST00000491165 KRTAP9-9Q9BYP9 154 aa5.34□□□□□ -1.55
USF3-203ENST00000491165 MUC5ACP98088 5654 aa5.25□□□□□ -1.57
USF3-203ENST00000491165 KRTAP4-12Q9BQ66 201 aa5.23□□□□□ -1.57
USF3-203ENST00000491165 KRTAP4-2Q9BYR5 136 aa5.14□□□□□ -1.59
USF3-203ENST00000491165 LCE1BQ5T7P3 118 aa5.12□□□□□ -1.59
USF3-203ENST00000491165 LCE1CQ5T751 118 aa5.06□□□□□ -1.6
USF3-203ENST00000491165 MUC5BQ9HC84 5762 aaPredicted RBP4.9□□□□□ -1.63
USF3-203ENST00000491165 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.69□□□□□ -1.66
USF3-203ENST00000491165 AHNAKQ09666 5890 aaKnown RBP4.58□□□□□ -1.68
USF3-203ENST00000491165 KRTAP5-11Q6L8G4 156 aa4.51□□□□□ -1.69
USF3-203ENST00000491165 KRTAP21-2Q3LI59 83 aa4.45□□□□□ -1.7
USF3-203ENST00000491165 LCE1FQ5T754 118 aa4.12□□□□□ -1.75
USF3-203ENST00000491165 KRTAP4-4Q9BYR3 166 aa4.01□□□□□ -1.77
USF3-203ENST00000491165 PHGR1C9JFL3 82 aa3.89□□□□□ -1.79
USF3-203ENST00000491165 KRTAP21-1Q3LI58 79 aa3.76□□□□□ -1.81
USF3-203ENST00000491165 MUC19Q7Z5P9 8384 aa3.64□□□□□ -1.83
USF3-203ENST00000491165 MUC16Q8WXI7 14507 aa2.47□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 8.5 ms