RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
HMGB1-208ENST00000490788 MRPL34Q9BQ48 92 aaKnown RBP0.98□□□□□ -2.25
HMGB1-208ENST00000490788 NOP10Q9NPE3 64 aaKnown RBP0.98□□□□□ -2.25
HMGB1-208ENST00000490788 SPINK1P00995 79 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 HTN3P15516 51 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 KRTAP12-4P60329 112 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 H1FX-AS1Q4G0G2 97 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 R4GN34 69 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 DNAH8Q96JB1 4490 aa0.97□□□□□ -2.25
HMGB1-208ENST00000490788 A0A096LPF7 62 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 H3BUA1 57 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 PRLHP81277 87 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 SPACA4Q8TDM5 124 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 PRO2289Q9P1D8 64 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 MUC12Q9UKN1 5478 aa0.96□□□□□ -2.26
HMGB1-208ENST00000490788 MT1HP80294 61 aa0.95□□□□□ -2.26
HMGB1-208ENST00000490788 PLAC4Q8WY50 150 aa0.95□□□□□ -2.26
HMGB1-208ENST00000490788 A0A096LNI7 61 aa0.94□□□□□ -2.26
HMGB1-208ENST00000490788 SPRR1AP35321 89 aa0.94□□□□□ -2.26
HMGB1-208ENST00000490788 Q6ZRN7 208 aaPredicted RBP0.93□□□□□ -2.26
HMGB1-208ENST00000490788 AHNAK2Q8IVF2 5795 aa0.93□□□□□ -2.26
HMGB1-208ENST00000490788 A0A0D9SG42 100 aa0.92□□□□□ -2.26
HMGB1-208ENST00000490788 RPL37P61927 97 aaKnown RBP0.92□□□□□ -2.26
HMGB1-208ENST00000490788 KRTAP4-1Q9BYQ7 146 aa0.92□□□□□ -2.26
HMGB1-208ENST00000490788 MUC17Q685J3 4493 aa0.91□□□□□ -2.26
HMGB1-208ENST00000490788 SPART-AS1P0CW21 52 aa0.91□□□□□ -2.26
HMGB1-208ENST00000490788 SPRR1BP22528 89 aa0.91□□□□□ -2.26
HMGB1-208ENST00000490788 COX6B2Q6YFQ2 88 aa0.91□□□□□ -2.26
HMGB1-208ENST00000490788 PRO0255Q9UI72 69 aa0.91□□□□□ -2.26
HMGB1-208ENST00000490788 SPRR2EP22531 72 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 SPRR2BP35325 72 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 SPRR2AP35326 72 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 KRTAP19-6Q3LI70 58 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 KRTAP5-10Q6L8G5 202 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 SPINK6Q6UWN8 80 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 S4R3F8 94 aa0.9□□□□□ -2.27
HMGB1-208ENST00000490788 DSTQ03001 7570 aaKnown RBP0.9□□□□□ -2.27
HMGB1-208ENST00000490788 INE1O15225 51 aa0.89□□□□□ -2.27
HMGB1-208ENST00000490788 SPRR2DP22532 72 aa0.89□□□□□ -2.27
HMGB1-208ENST00000490788 KRTAP13-4Q3LI77 160 aa0.88□□□□□ -2.27
HMGB1-208ENST00000490788 AHNAKQ09666 5890 aaKnown RBP0.86□□□□□ -2.27
HMGB1-208ENST00000490788 KRTAP12-1P59990 96 aa0.85□□□□□ -2.27
HMGB1-208ENST00000490788 MDN1Q9NU22 5596 aa0.85□□□□□ -2.27
HMGB1-208ENST00000490788 SPRR2FQ96RM1 72 aa0.84□□□□□ -2.27
HMGB1-208ENST00000490788 KRTAP19-2Q3LHN2 52 aa0.83□□□□□ -2.28
HMGB1-208ENST00000490788 LINC01556Q5JQF7 62 aa0.83□□□□□ -2.28
HMGB1-208ENST00000490788 MT4P47944 62 aa0.81□□□□□ -2.28
HMGB1-208ENST00000490788 MUC5BQ9HC84 5762 aaPredicted RBP0.81□□□□□ -2.28
HMGB1-208ENST00000490788 FLGP20930 4061 aaPredicted RBP0.8□□□□□ -2.28
HMGB1-208ENST00000490788 H3BNG1 76 aa0.8□□□□□ -2.28
HMGB1-208ENST00000490788 MT2AP02795 61 aa0.79□□□□□ -2.28
HMGB1-208ENST00000490788 MT1FP04733 61 aa0.79□□□□□ -2.28
HMGB1-208ENST00000490788 M0QZ58 72 aa0.77□□□□□ -2.29
HMGB1-208ENST00000490788 MUC5ACP98088 5654 aa0.76□□□□□ -2.29
HMGB1-208ENST00000490788 C9orf92A6NGG3 77 aa0.75□□□□□ -2.29
HMGB1-208ENST00000490788 KRTAP8-1Q8IUC2 63 aa0.73□□□□□ -2.29
HMGB1-208ENST00000490788 TNP1P09430 55 aa0.7□□□□□ -2.3
HMGB1-208ENST00000490788 RPS29P62273 56 aaKnown RBP0.67□□□□□ -2.3
HMGB1-208ENST00000490788 SYNE1Q8NF91 8797 aaKnown RBP0.66□□□□□ -2.3
HMGB1-208ENST00000490788 KRTAP20-2Q3LI61 65 aa0.63□□□□□ -2.31
HMGB1-208ENST00000490788 MT1BP07438 61 aa0.61□□□□□ -2.31
HMGB1-208ENST00000490788 PHGR1C9JFL3 82 aa0.59□□□□□ -2.31
HMGB1-208ENST00000490788 PRM1P04553 51 aa0.56□□□□□ -2.32
HMGB1-208ENST00000490788 KRTAP19-8Q3LI54 63 aa0.56□□□□□ -2.32
HMGB1-208ENST00000490788 KRTAP19-3Q7Z4W3 81 aa0.55□□□□□ -2.32
HMGB1-208ENST00000490788 KRTAP19-5Q3LI72 72 aa0.54□□□□□ -2.32
HMGB1-208ENST00000490788 SPRR2GQ9BYE4 73 aa0.51□□□□□ -2.33
HMGB1-208ENST00000490788 MT1GP13640 62 aa0.5□□□□□ -2.33
HMGB1-208ENST00000490788 MT1XP80297 61 aa0.5□□□□□ -2.33
HMGB1-208ENST00000490788 KRTAP6-2Q3LI66 62 aa0.48□□□□□ -2.33
HMGB1-208ENST00000490788 MT1MQ8N339 61 aa0.48□□□□□ -2.33
HMGB1-208ENST00000490788 MT1AP04731 61 aa0.47□□□□□ -2.33
HMGB1-208ENST00000490788 MT1EP04732 61 aa0.47□□□□□ -2.33
HMGB1-208ENST00000490788 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
HMGB1-208ENST00000490788 MT1LQ93083 61 aa0.45□□□□□ -2.34
HMGB1-208ENST00000490788 KRTAP19-7Q3SYF9 63 aa0.44□□□□□ -2.34
HMGB1-208ENST00000490788 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
HMGB1-208ENST00000490788 KRTAP6-1Q3LI64 71 aa0.39□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 11.2 ms