RNA–Protein interactions for RNA: ENST00000486901.1

HSPG2-211, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 3,586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-211ENST00000486901 SYNE2Q8WXH0 6885 aaKnown RBP4.28□□□□□ -1.72
HSPG2-211ENST00000486901 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
HSPG2-211ENST00000486901 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
HSPG2-211ENST00000486901 LCE2AQ5TA79 106 aaPredicted RBP4.25□□□□□ -1.73
HSPG2-211ENST00000486901 MT1LQ93083 61 aa4.17□□□□□ -1.74
HSPG2-211ENST00000486901 KRTAP2-3P0C7H8 128 aa4.17□□□□□ -1.74
HSPG2-211ENST00000486901 KRTAP2-4Q9BYR9 128 aa4.17□□□□□ -1.74
HSPG2-211ENST00000486901 KRTAP2-1Q9BYU5 128 aa4.17□□□□□ -1.74
HSPG2-211ENST00000486901 MT1GP13640 62 aa4.14□□□□□ -1.75
HSPG2-211ENST00000486901 SPRR2FQ96RM1 72 aa4.13□□□□□ -1.75
HSPG2-211ENST00000486901 MT1EP04732 61 aa4.13□□□□□ -1.75
HSPG2-211ENST00000486901 MACF1Q9UPN3 7388 aaKnown RBP4.08□□□□□ -1.76
HSPG2-211ENST00000486901 KRTAP12-4P60329 112 aa4□□□□□ -1.77
HSPG2-211ENST00000486901 KRTAP4-9Q9BYQ8 210 aa3.99□□□□□ -1.77
HSPG2-211ENST00000486901 LCE3BQ5TA77 95 aa3.94□□□□□ -1.78
HSPG2-211ENST00000486901 MDN1Q9NU22 5596 aa3.92□□□□□ -1.78
HSPG2-211ENST00000486901 KRTAP19-4Q3LI73 84 aa3.88□□□□□ -1.79
HSPG2-211ENST00000486901 MT1MQ8N339 61 aa3.87□□□□□ -1.79
HSPG2-211ENST00000486901 KRTAP19-6Q3LI70 58 aa3.85□□□□□ -1.79
HSPG2-211ENST00000486901 KRTAP19-3Q7Z4W3 81 aa3.81□□□□□ -1.8
HSPG2-211ENST00000486901 KRTAP9-2Q9BYQ4 174 aa3.74□□□□□ -1.81
HSPG2-211ENST00000486901 SPRR2EP22531 72 aa3.71□□□□□ -1.82
HSPG2-211ENST00000486901 SPRR2BP35325 72 aa3.71□□□□□ -1.82
HSPG2-211ENST00000486901 SPRR2AP35326 72 aa3.71□□□□□ -1.82
HSPG2-211ENST00000486901 KRTAP9-7A8MTY7 169 aa3.68□□□□□ -1.82
HSPG2-211ENST00000486901 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.82
HSPG2-211ENST00000486901 LCE5AQ5TCM9 118 aa3.6□□□□□ -1.83
HSPG2-211ENST00000486901 PRM1P04553 51 aa3.58□□□□□ -1.84
HSPG2-211ENST00000486901 LCE3DQ9BYE3 92 aa3.57□□□□□ -1.84
HSPG2-211ENST00000486901 SPRR2DP22532 72 aa3.51□□□□□ -1.85
HSPG2-211ENST00000486901 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
HSPG2-211ENST00000486901 KRTAP5-5Q701N2 237 aaPredicted RBP3.47□□□□□ -1.85
HSPG2-211ENST00000486901 KRTAP9-6A0A140TA67 174 aa3.42□□□□□ -1.86
HSPG2-211ENST00000486901 LCE1AQ5T7P2 110 aa3.41□□□□□ -1.86
HSPG2-211ENST00000486901 MT1AP04731 61 aa3.4□□□□□ -1.87
HSPG2-211ENST00000486901 MT4P47944 62 aa3.39□□□□□ -1.87
HSPG2-211ENST00000486901 KRTAP6-2Q3LI66 62 aa3.37□□□□□ -1.87
HSPG2-211ENST00000486901 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
HSPG2-211ENST00000486901 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
HSPG2-211ENST00000486901 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.25□□□□□ -1.89
HSPG2-211ENST00000486901 KRTAP5-9P26371 169 aa3.25□□□□□ -1.89
HSPG2-211ENST00000486901 LCE1FQ5T754 118 aa3.23□□□□□ -1.89
HSPG2-211ENST00000486901 KRTAP2-2Q9BYT5 123 aa3.21□□□□□ -1.9
HSPG2-211ENST00000486901 KRTAP9-4Q9BYQ2 154 aa3.2□□□□□ -1.9
HSPG2-211ENST00000486901 NEBP20929 6669 aa3.1□□□□□ -1.91
HSPG2-211ENST00000486901 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
HSPG2-211ENST00000486901 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
HSPG2-211ENST00000486901 KRTAP4-6Q9BYQ5 205 aa3.08□□□□□ -1.92
HSPG2-211ENST00000486901 MT3P25713 68 aa3.08□□□□□ -1.92
HSPG2-211ENST00000486901 LCE1BQ5T7P3 118 aa3.04□□□□□ -1.92
HSPG2-211ENST00000486901 LCE4AQ5TA78 99 aa3.02□□□□□ -1.93
HSPG2-211ENST00000486901 MUC5ACP98088 5654 aa2.93□□□□□ -1.94
HSPG2-211ENST00000486901 KRTAP9-9Q9BYP9 154 aa2.89□□□□□ -1.95
HSPG2-211ENST00000486901 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
HSPG2-211ENST00000486901 KRTAP5-4Q6L8H1 288 aa2.81□□□□□ -1.96
HSPG2-211ENST00000486901 KRTAP4-11Q9BYQ6 195 aa2.79□□□□□ -1.96
HSPG2-211ENST00000486901 KRTAP20-1Q3LI63 56 aa2.77□□□□□ -1.97
HSPG2-211ENST00000486901 KRTAP20-2Q3LI61 65 aa2.73□□□□□ -1.97
HSPG2-211ENST00000486901 KRTAP5-2Q701N4 177 aa2.63□□□□□ -1.99
HSPG2-211ENST00000486901 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
HSPG2-211ENST00000486901 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
HSPG2-211ENST00000486901 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
HSPG2-211ENST00000486901 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
HSPG2-211ENST00000486901 KRTAP5-10Q6L8G5 202 aa2.51□□□□□ -2.01
HSPG2-211ENST00000486901 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
HSPG2-211ENST00000486901 KRTAP4-2Q9BYR5 136 aa2.46□□□□□ -2.01
HSPG2-211ENST00000486901 AHNAK2Q8IVF2 5795 aa2.45□□□□□ -2.02
HSPG2-211ENST00000486901 KRTAP5-1Q6L8H4 278 aa2.3□□□□□ -2.04
HSPG2-211ENST00000486901 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
HSPG2-211ENST00000486901 KRTAP21-2Q3LI59 83 aa2.24□□□□□ -2.05
HSPG2-211ENST00000486901 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
HSPG2-211ENST00000486901 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
HSPG2-211ENST00000486901 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.11□□□□□ -2.07
HSPG2-211ENST00000486901 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
HSPG2-211ENST00000486901 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
HSPG2-211ENST00000486901 AHNAKQ09666 5890 aaKnown RBP1.93□□□□□ -2.1
HSPG2-211ENST00000486901 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
HSPG2-211ENST00000486901 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 93.2 ms