RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MT1GP13640 62 aa6.06□□□□□ -1.44
CCDC88B-207ENST00000479965 KRTAP19-4Q3LI73 84 aa6.05□□□□□ -1.44
CCDC88B-207ENST00000479965 FSIP2Q5CZC0 6907 aa6□□□□□ -1.45
CCDC88B-207ENST00000479965 DSTQ03001 7570 aaKnown RBP5.98□□□□□ -1.45
CCDC88B-207ENST00000479965 FCGBPQ9Y6R7 5405 aaPredicted RBP5.95□□□□□ -1.46
CCDC88B-207ENST00000479965 MUC12Q9UKN1 5478 aa5.95□□□□□ -1.46
CCDC88B-207ENST00000479965 LCE2AQ5TA79 106 aaPredicted RBP5.85□□□□□ -1.47
CCDC88B-207ENST00000479965 SSPOA2VEC9 5147 aa5.84□□□□□ -1.48
CCDC88B-207ENST00000479965 SYNE1Q8NF91 8797 aaKnown RBP5.8□□□□□ -1.48
CCDC88B-207ENST00000479965 LCE3BQ5TA77 95 aa5.78□□□□□ -1.48
CCDC88B-207ENST00000479965 KRTAP4-9Q9BYQ8 210 aa5.78□□□□□ -1.48
CCDC88B-207ENST00000479965 MT1MQ8N339 61 aa5.76□□□□□ -1.49
CCDC88B-207ENST00000479965 LCE2DQ5TA82 110 aaPredicted RBP5.73□□□□□ -1.49
CCDC88B-207ENST00000479965 KRTAP19-3Q7Z4W3 81 aa5.68□□□□□ -1.5
CCDC88B-207ENST00000479965 KRTAP9-2Q9BYQ4 174 aa5.54□□□□□ -1.52
CCDC88B-207ENST00000479965 KRTAP19-6Q3LI70 58 aa5.52□□□□□ -1.53
CCDC88B-207ENST00000479965 KRTAP9-7A8MTY7 169 aa5.51□□□□□ -1.53
CCDC88B-207ENST00000479965 OBSCNQ5VST9 7968 aa5.5□□□□□ -1.53
CCDC88B-207ENST00000479965 PRM1P04553 51 aa5.49□□□□□ -1.53
CCDC88B-207ENST00000479965 LCE3DQ9BYE3 92 aa5.48□□□□□ -1.53
CCDC88B-207ENST00000479965 LCE3EQ5T5B0 92 aa5.42□□□□□ -1.54
CCDC88B-207ENST00000479965 SPRR2FQ96RM1 72 aa5.4□□□□□ -1.54
CCDC88B-207ENST00000479965 KRTAP6-1Q3LI64 71 aa5.4□□□□□ -1.55
CCDC88B-207ENST00000479965 MT1AP04731 61 aa5.39□□□□□ -1.55
CCDC88B-207ENST00000479965 LCE5AQ5TCM9 118 aa5.37□□□□□ -1.55
CCDC88B-207ENST00000479965 SYNE2Q8WXH0 6885 aaKnown RBP5.35□□□□□ -1.55
CCDC88B-207ENST00000479965 KRTAP5-5Q701N2 237 aaPredicted RBP5.35□□□□□ -1.55
CCDC88B-207ENST00000479965 MDN1Q9NU22 5596 aa5.16□□□□□ -1.58
CCDC88B-207ENST00000479965 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
CCDC88B-207ENST00000479965 KRTAP6-2Q3LI66 62 aa5.14□□□□□ -1.59
CCDC88B-207ENST00000479965 KRTAP9-6A0A140TA67 174 aa5.03□□□□□ -1.6
CCDC88B-207ENST00000479965 KRTAP6-3Q3LI67 103 aa4.99□□□□□ -1.61
CCDC88B-207ENST00000479965 KRTAP9-4Q9BYQ2 154 aa4.86□□□□□ -1.63
CCDC88B-207ENST00000479965 LCE1AQ5T7P2 110 aa4.83□□□□□ -1.64
CCDC88B-207ENST00000479965 KRTAP2-2Q9BYT5 123 aa4.81□□□□□ -1.64
CCDC88B-207ENST00000479965 SPRR2EP22531 72 aa4.71□□□□□ -1.66
CCDC88B-207ENST00000479965 SPRR2BP35325 72 aa4.71□□□□□ -1.66
CCDC88B-207ENST00000479965 SPRR2AP35326 72 aa4.71□□□□□ -1.66
CCDC88B-207ENST00000479965 MT3P25713 68 aa4.68□□□□□ -1.66
CCDC88B-207ENST00000479965 KRTAP5-9P26371 169 aa4.49□□□□□ -1.69
CCDC88B-207ENST00000479965 SPRR2DP22532 72 aa4.46□□□□□ -1.69
CCDC88B-207ENST00000479965 LCE1EQ5T753 118 aa4.46□□□□□ -1.7
CCDC88B-207ENST00000479965 LCE1DQ5T752 114 aa4.28□□□□□ -1.72
CCDC88B-207ENST00000479965 KRTAP4-11Q9BYQ6 195 aa4.15□□□□□ -1.74
CCDC88B-207ENST00000479965 MUC5ACP98088 5654 aa4.14□□□□□ -1.75
CCDC88B-207ENST00000479965 KRTAP4-6Q9BYQ5 205 aa4.11□□□□□ -1.75
CCDC88B-207ENST00000479965 MT4P47944 62 aa4.1□□□□□ -1.75
CCDC88B-207ENST00000479965 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.08□□□□□ -1.76
CCDC88B-207ENST00000479965 KRTAP5-4Q6L8H1 288 aa4.01□□□□□ -1.77
CCDC88B-207ENST00000479965 LCE1BQ5T7P3 118 aa3.93□□□□□ -1.78
CCDC88B-207ENST00000479965 KRTAP20-2Q3LI61 65 aa3.89□□□□□ -1.79
CCDC88B-207ENST00000479965 KRTAP5-10Q6L8G5 202 aa3.86□□□□□ -1.79
CCDC88B-207ENST00000479965 NEBP20929 6669 aa3.84□□□□□ -1.79
CCDC88B-207ENST00000479965 KRTAP5-2Q701N4 177 aa3.82□□□□□ -1.8
CCDC88B-207ENST00000479965 HMCN1Q96RW7 5635 aa3.81□□□□□ -1.8
CCDC88B-207ENST00000479965 MUC19Q7Z5P9 8384 aa3.77□□□□□ -1.81
CCDC88B-207ENST00000479965 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
CCDC88B-207ENST00000479965 LCE4AQ5TA78 99 aa3.63□□□□□ -1.83
CCDC88B-207ENST00000479965 KRTAP5-3Q6L8H2 238 aa3.58□□□□□ -1.84
CCDC88B-207ENST00000479965 KRTAP4-2Q9BYR5 136 aa3.47□□□□□ -1.85
CCDC88B-207ENST00000479965 KRTAP20-1Q3LI63 56 aa3.42□□□□□ -1.86
CCDC88B-207ENST00000479965 LCE1CQ5T751 118 aa3.4□□□□□ -1.86
CCDC88B-207ENST00000479965 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
CCDC88B-207ENST00000479965 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
CCDC88B-207ENST00000479965 LCE1FQ5T754 118 aa3.35□□□□□ -1.87
CCDC88B-207ENST00000479965 KRTAP21-1Q3LI58 79 aa3.35□□□□□ -1.87
CCDC88B-207ENST00000479965 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.15□□□□□ -1.91
CCDC88B-207ENST00000479965 GPR98Q8WXG9 6306 aa3.05□□□□□ -1.92
CCDC88B-207ENST00000479965 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
CCDC88B-207ENST00000479965 AHNAK2Q8IVF2 5795 aa2.96□□□□□ -1.94
CCDC88B-207ENST00000479965 KRTAP4-12Q9BQ66 201 aa2.95□□□□□ -1.94
CCDC88B-207ENST00000479965 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
CCDC88B-207ENST00000479965 KRTAP5-11Q6L8G4 156 aa2.84□□□□□ -1.95
CCDC88B-207ENST00000479965 KRTAP5-7Q6L8G8 165 aa2.79□□□□□ -1.96
CCDC88B-207ENST00000479965 AHNAKQ09666 5890 aaKnown RBP2.62□□□□□ -1.99
CCDC88B-207ENST00000479965 KRTAP9-9Q9BYP9 154 aa2.54□□□□□ -2
CCDC88B-207ENST00000479965 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
CCDC88B-207ENST00000479965 MUC16Q8WXI7 14507 aa1.8□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 11.2 ms