RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 PP632Q6XCG6 107 aa3.41□□□□□ -1.86
VMA21-203ENST00000477649 KRTAP23-1A1A580 65 aa3.39□□□□□ -1.87
VMA21-203ENST00000477649 TNP1P09430 55 aa3.39□□□□□ -1.87
VMA21-203ENST00000477649 SSPOA2VEC9 5147 aa3.35□□□□□ -1.87
VMA21-203ENST00000477649 USH2AO75445 5202 aa3.34□□□□□ -1.88
VMA21-203ENST00000477649 MT1BP07438 61 aa3.33□□□□□ -1.88
VMA21-203ENST00000477649 PRO2289Q9P1D8 64 aa3.32□□□□□ -1.88
VMA21-203ENST00000477649 FCGBPQ9Y6R7 5405 aaPredicted RBP3.28□□□□□ -1.88
VMA21-203ENST00000477649 SYNE2Q8WXH0 6885 aaKnown RBP3.25□□□□□ -1.89
VMA21-203ENST00000477649 KRTAP10-5P60370 271 aa3.24□□□□□ -1.89
VMA21-203ENST00000477649 MT1XP80297 61 aa3.24□□□□□ -1.89
VMA21-203ENST00000477649 MACF1Q9UPN3 7388 aaKnown RBP3.22□□□□□ -1.89
VMA21-203ENST00000477649 KRTAP10-12P60413 245 aa3.15□□□□□ -1.91
VMA21-203ENST00000477649 OBSCNQ5VST9 7968 aa3.14□□□□□ -1.91
VMA21-203ENST00000477649 KRTAP8-1Q8IUC2 63 aa3.14□□□□□ -1.91
VMA21-203ENST00000477649 LCE3AQ5TA76 89 aa3.13□□□□□ -1.91
VMA21-203ENST00000477649 KRTAP5-2Q701N4 177 aa3.13□□□□□ -1.91
VMA21-203ENST00000477649 KRTAP4-3Q9BYR4 195 aa3.1□□□□□ -1.91
VMA21-203ENST00000477649 KRTAP19-6Q3LI70 58 aa3.09□□□□□ -1.91
VMA21-203ENST00000477649 NEBP20929 6669 aa3.05□□□□□ -1.92
VMA21-203ENST00000477649 KRTAP12-3P60328 96 aa3.05□□□□□ -1.92
VMA21-203ENST00000477649 KRTAP9-6A8MVA2 160 aa3.04□□□□□ -1.92
VMA21-203ENST00000477649 MUC12Q9UKN1 5478 aa3.04□□□□□ -1.92
VMA21-203ENST00000477649 LUZP6Q538Z0 58 aa3□□□□□ -1.93
VMA21-203ENST00000477649 SPRR5A0A1B0GTR4 108 aa2.99□□□□□ -1.93
VMA21-203ENST00000477649 KRTAP6-3Q3LI67 103 aa2.98□□□□□ -1.93
VMA21-203ENST00000477649 KRTAP19-5Q3LI72 72 aa2.95□□□□□ -1.94
VMA21-203ENST00000477649 MDN1Q9NU22 5596 aa2.91□□□□□ -1.94
VMA21-203ENST00000477649 NDUFAF8A1L188 74 aa2.9□□□□□ -1.95
VMA21-203ENST00000477649 KRTAP19-7Q3SYF9 63 aa2.89□□□□□ -1.95
VMA21-203ENST00000477649 KRTAP20-1Q3LI63 56 aa2.87□□□□□ -1.95
VMA21-203ENST00000477649 KMT2DO14686 5537 aa2.86□□□□□ -1.95
VMA21-203ENST00000477649 MT1EP04732 61 aa2.85□□□□□ -1.95
VMA21-203ENST00000477649 LCE3CQ5T5A8 94 aa2.85□□□□□ -1.95
VMA21-203ENST00000477649 MT1LQ93083 61 aa2.81□□□□□ -1.96
VMA21-203ENST00000477649 MT1GP13640 62 aa2.76□□□□□ -1.97
VMA21-203ENST00000477649 KRTAP19-3Q7Z4W3 81 aa2.74□□□□□ -1.97
VMA21-203ENST00000477649 KRTAP2-3P0C7H8 128 aa2.72□□□□□ -1.97
VMA21-203ENST00000477649 KRTAP2-4Q9BYR9 128 aa2.72□□□□□ -1.97
VMA21-203ENST00000477649 SPRR2FQ96RM1 72 aa2.71□□□□□ -1.98
VMA21-203ENST00000477649 A0A0A0MQY5 61 aa2.68□□□□□ -1.98
VMA21-203ENST00000477649 KRTAP5-8O75690 187 aa2.67□□□□□ -1.98
VMA21-203ENST00000477649 MT3P25713 68 aa2.67□□□□□ -1.98
VMA21-203ENST00000477649 MT1MQ8N339 61 aa2.67□□□□□ -1.98
VMA21-203ENST00000477649 GPR98Q8WXG9 6306 aa2.64□□□□□ -1.99
VMA21-203ENST00000477649 SPRR2EP22531 72 aa2.62□□□□□ -1.99
VMA21-203ENST00000477649 SPRR2BP35325 72 aa2.62□□□□□ -1.99
VMA21-203ENST00000477649 SPRR2AP35326 72 aa2.62□□□□□ -1.99
VMA21-203ENST00000477649 KRTAP2-1Q9BYU5 128 aa2.61□□□□□ -1.99
VMA21-203ENST00000477649 DSTQ03001 7570 aaKnown RBP2.53□□□□□ -2
VMA21-203ENST00000477649 SPRR2DP22532 72 aa2.53□□□□□ -2
VMA21-203ENST00000477649 INE1O15225 51 aa2.51□□□□□ -2.01
VMA21-203ENST00000477649 MT1AP04731 61 aa2.42□□□□□ -2.02
VMA21-203ENST00000477649 KRTAP5-5Q701N2 237 aaPredicted RBP2.41□□□□□ -2.02
VMA21-203ENST00000477649 AHNAK2Q8IVF2 5795 aa2.41□□□□□ -2.02
VMA21-203ENST00000477649 HMCN1Q96RW7 5635 aa2.4□□□□□ -2.03
VMA21-203ENST00000477649 LCE1FQ5T754 118 aa2.36□□□□□ -2.03
VMA21-203ENST00000477649 KRTAP6-1Q3LI64 71 aa2.33□□□□□ -2.04
VMA21-203ENST00000477649 KRTAP5-10Q6L8G5 202 aa2.3□□□□□ -2.04
VMA21-203ENST00000477649 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
VMA21-203ENST00000477649 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
VMA21-203ENST00000477649 SYNE1Q8NF91 8797 aaKnown RBP2.28□□□□□ -2.04
VMA21-203ENST00000477649 MT4P47944 62 aa2.27□□□□□ -2.05
VMA21-203ENST00000477649 KRTAP12-4P60329 112 aa2.27□□□□□ -2.05
VMA21-203ENST00000477649 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
VMA21-203ENST00000477649 LCE3DQ9BYE3 92 aa2.17□□□□□ -2.06
VMA21-203ENST00000477649 KRTAP6-2Q3LI66 62 aa2.14□□□□□ -2.07
VMA21-203ENST00000477649 LCE3EQ5T5B0 92 aa2.13□□□□□ -2.07
VMA21-203ENST00000477649 KRTAP20-2Q3LI61 65 aa2.1□□□□□ -2.07
VMA21-203ENST00000477649 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
VMA21-203ENST00000477649 MUC5ACP98088 5654 aa2.01□□□□□ -2.09
VMA21-203ENST00000477649 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
VMA21-203ENST00000477649 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
VMA21-203ENST00000477649 PRM1P04553 51 aa1.85□□□□□ -2.11
VMA21-203ENST00000477649 KRTAP21-2Q3LI59 83 aa1.7□□□□□ -2.14
VMA21-203ENST00000477649 PHGR1C9JFL3 82 aa1.33□□□□□ -2.2
VMA21-203ENST00000477649 KRTAP21-1Q3LI58 79 aa1.18□□□□□ -2.22
VMA21-203ENST00000477649 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 138.3 ms