RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 LCE3BQ5TA77 95 aa4.75□□□□□ -1.65
HDAC6-220ENST00000477528 MT1MQ8N339 61 aa4.71□□□□□ -1.66
HDAC6-220ENST00000477528 KRTAP12-4P60329 112 aa4.69□□□□□ -1.66
HDAC6-220ENST00000477528 FSIP2Q5CZC0 6907 aa4.68□□□□□ -1.66
HDAC6-220ENST00000477528 LCE2DQ5TA82 110 aaPredicted RBP4.65□□□□□ -1.66
HDAC6-220ENST00000477528 SPRR2DP22532 72 aa4.61□□□□□ -1.67
HDAC6-220ENST00000477528 KRTAP4-3Q9BYR4 195 aa4.6□□□□□ -1.67
HDAC6-220ENST00000477528 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.68
HDAC6-220ENST00000477528 KRTAP2-3P0C7H8 128 aa4.55□□□□□ -1.68
HDAC6-220ENST00000477528 KRTAP2-4Q9BYR9 128 aa4.55□□□□□ -1.68
HDAC6-220ENST00000477528 KRTAP2-1Q9BYU5 128 aa4.55□□□□□ -1.68
HDAC6-220ENST00000477528 KRTAP9-6A8MVA2 160 aa4.52□□□□□ -1.69
HDAC6-220ENST00000477528 LCE3DQ9BYE3 92 aa4.52□□□□□ -1.69
HDAC6-220ENST00000477528 USH2AO75445 5202 aa4.51□□□□□ -1.69
HDAC6-220ENST00000477528 KRTAP9-2Q9BYQ4 174 aa4.47□□□□□ -1.69
HDAC6-220ENST00000477528 LCE3EQ5T5B0 92 aa4.45□□□□□ -1.7
HDAC6-220ENST00000477528 KMT2DO14686 5537 aa4.33□□□□□ -1.72
HDAC6-220ENST00000477528 MT1AP04731 61 aa4.33□□□□□ -1.72
HDAC6-220ENST00000477528 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
HDAC6-220ENST00000477528 MT3P25713 68 aa4.25□□□□□ -1.73
HDAC6-220ENST00000477528 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
HDAC6-220ENST00000477528 LCE1AQ5T7P2 110 aa4.19□□□□□ -1.74
HDAC6-220ENST00000477528 KRTAP4-9Q9BYQ8 210 aa4.17□□□□□ -1.74
HDAC6-220ENST00000477528 SSPOA2VEC9 5147 aa4.17□□□□□ -1.74
HDAC6-220ENST00000477528 KRTAP6-1Q3LI64 71 aa4.15□□□□□ -1.74
HDAC6-220ENST00000477528 SYNE2Q8WXH0 6885 aaKnown RBP4.12□□□□□ -1.75
HDAC6-220ENST00000477528 PRM1P04553 51 aa4.1□□□□□ -1.75
HDAC6-220ENST00000477528 FCGBPQ9Y6R7 5405 aaPredicted RBP4.09□□□□□ -1.75
HDAC6-220ENST00000477528 KRTAP6-3Q3LI67 103 aa4.08□□□□□ -1.76
HDAC6-220ENST00000477528 KRTAP9-6A0A140TA67 174 aa4.06□□□□□ -1.76
HDAC6-220ENST00000477528 MT4P47944 62 aa4.05□□□□□ -1.76
HDAC6-220ENST00000477528 DSTQ03001 7570 aaKnown RBP4.02□□□□□ -1.77
HDAC6-220ENST00000477528 KRTAP9-4Q9BYQ2 154 aa4.01□□□□□ -1.77
HDAC6-220ENST00000477528 MUC12Q9UKN1 5478 aa3.99□□□□□ -1.77
HDAC6-220ENST00000477528 MACF1Q9UPN3 7388 aaKnown RBP3.98□□□□□ -1.77
HDAC6-220ENST00000477528 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.77
HDAC6-220ENST00000477528 OBSCNQ5VST9 7968 aa3.93□□□□□ -1.78
HDAC6-220ENST00000477528 KRTAP6-2Q3LI66 62 aa3.93□□□□□ -1.78
HDAC6-220ENST00000477528 KRTAP5-9P26371 169 aa3.91□□□□□ -1.78
HDAC6-220ENST00000477528 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
HDAC6-220ENST00000477528 LCE1DQ5T752 114 aa3.8□□□□□ -1.8
HDAC6-220ENST00000477528 LCE4AQ5TA78 99 aa3.78□□□□□ -1.8
HDAC6-220ENST00000477528 LCE1BQ5T7P3 118 aa3.74□□□□□ -1.81
HDAC6-220ENST00000477528 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
HDAC6-220ENST00000477528 KRTAP2-2Q9BYT5 123 aa3.65□□□□□ -1.82
HDAC6-220ENST00000477528 MDN1Q9NU22 5596 aa3.58□□□□□ -1.84
HDAC6-220ENST00000477528 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
HDAC6-220ENST00000477528 NEBP20929 6669 aa3.51□□□□□ -1.85
HDAC6-220ENST00000477528 KRTAP4-6Q9BYQ5 205 aa3.46□□□□□ -1.86
HDAC6-220ENST00000477528 KRTAP20-2Q3LI61 65 aa3.42□□□□□ -1.86
HDAC6-220ENST00000477528 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
HDAC6-220ENST00000477528 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
HDAC6-220ENST00000477528 KRTAP4-11Q9BYQ6 195 aa3.04□□□□□ -1.92
HDAC6-220ENST00000477528 KRTAP9-9Q9BYP9 154 aa3□□□□□ -1.93
HDAC6-220ENST00000477528 LCE1CQ5T751 118 aa3□□□□□ -1.93
HDAC6-220ENST00000477528 LCE1FQ5T754 118 aa3□□□□□ -1.93
HDAC6-220ENST00000477528 KRTAP5-2Q701N4 177 aa2.93□□□□□ -1.94
HDAC6-220ENST00000477528 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
HDAC6-220ENST00000477528 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
HDAC6-220ENST00000477528 HMCN1Q96RW7 5635 aa2.85□□□□□ -1.95
HDAC6-220ENST00000477528 KRTAP5-3Q6L8H2 238 aa2.85□□□□□ -1.95
HDAC6-220ENST00000477528 MUC5ACP98088 5654 aa2.83□□□□□ -1.96
HDAC6-220ENST00000477528 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
HDAC6-220ENST00000477528 KRTAP5-10Q6L8G5 202 aa2.69□□□□□ -1.98
HDAC6-220ENST00000477528 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
HDAC6-220ENST00000477528 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
HDAC6-220ENST00000477528 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
HDAC6-220ENST00000477528 KRTAP5-8O75690 187 aa2.53□□□□□ -2
HDAC6-220ENST00000477528 KRTAP5-1Q6L8H4 278 aa2.52□□□□□ -2.01
HDAC6-220ENST00000477528 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
HDAC6-220ENST00000477528 KRTAP5-11Q6L8G4 156 aa2.39□□□□□ -2.03
HDAC6-220ENST00000477528 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.37□□□□□ -2.03
HDAC6-220ENST00000477528 MUC5BQ9HC84 5762 aaPredicted RBP2.33□□□□□ -2.04
HDAC6-220ENST00000477528 KRTAP5-7Q6L8G8 165 aa2.2□□□□□ -2.06
HDAC6-220ENST00000477528 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
HDAC6-220ENST00000477528 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
HDAC6-220ENST00000477528 PHGR1C9JFL3 82 aa2.02□□□□□ -2.09
HDAC6-220ENST00000477528 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 93.3 ms