RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SSPOA2VEC9 5147 aa2.21□□□□□ -2.06
HERC4-209ENST00000473533 KRTAP9-7A8MTY7 169 aa2.16□□□□□ -2.06
HERC4-209ENST00000473533 KRTAP2-3P0C7H8 128 aa2.16□□□□□ -2.06
HERC4-209ENST00000473533 KRTAP2-4Q9BYR9 128 aa2.16□□□□□ -2.06
HERC4-209ENST00000473533 KRTAP2-1Q9BYU5 128 aa2.16□□□□□ -2.06
HERC4-209ENST00000473533 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.16□□□□□ -2.06
HERC4-209ENST00000473533 SYNE2Q8WXH0 6885 aaKnown RBP2.15□□□□□ -2.07
HERC4-209ENST00000473533 MACF1Q9UPN3 7388 aaKnown RBP2.15□□□□□ -2.07
HERC4-209ENST00000473533 KRTAP4-8A0A0G2JLE6 195 aa2.13□□□□□ -2.07
HERC4-209ENST00000473533 KRTAP4-12Q9BQ66 201 aa2.13□□□□□ -2.07
HERC4-209ENST00000473533 MUC12Q9UKN1 5478 aa2.12□□□□□ -2.07
HERC4-209ENST00000473533 KRTAP4-7Q9BYR0 210 aa2.11□□□□□ -2.07
HERC4-209ENST00000473533 KRTAP19-7Q3SYF9 63 aa2.1□□□□□ -2.07
HERC4-209ENST00000473533 KRTAP9-6A8MVA2 160 aa2.09□□□□□ -2.08
HERC4-209ENST00000473533 MT1LQ93083 61 aa2.09□□□□□ -2.08
HERC4-209ENST00000473533 MT1EP04732 61 aa2.08□□□□□ -2.08
HERC4-209ENST00000473533 LCE3BQ5TA77 95 aa2.08□□□□□ -2.08
HERC4-209ENST00000473533 KRTAP9-9Q9BYP9 154 aa2.04□□□□□ -2.08
HERC4-209ENST00000473533 KRTAP9-4Q9BYQ2 154 aa2.04□□□□□ -2.08
HERC4-209ENST00000473533 HMCN1Q96RW7 5635 aa2.03□□□□□ -2.08
HERC4-209ENST00000473533 LCE1DQ5T752 114 aa2□□□□□ -2.09
HERC4-209ENST00000473533 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
HERC4-209ENST00000473533 MT1GP13640 62 aa1.98□□□□□ -2.09
HERC4-209ENST00000473533 KRTAP4-9Q9BYQ8 210 aa1.96□□□□□ -2.1
HERC4-209ENST00000473533 NEBP20929 6669 aa1.96□□□□□ -2.1
HERC4-209ENST00000473533 KRTAP4-3Q9BYR4 195 aa1.95□□□□□ -2.1
HERC4-209ENST00000473533 KRTAP19-3Q7Z4W3 81 aa1.95□□□□□ -2.1
HERC4-209ENST00000473533 MDN1Q9NU22 5596 aa1.95□□□□□ -2.1
HERC4-209ENST00000473533 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
HERC4-209ENST00000473533 MT1MQ8N339 61 aa1.94□□□□□ -2.1
HERC4-209ENST00000473533 KRTAP12-4P60329 112 aa1.92□□□□□ -2.1
HERC4-209ENST00000473533 KRTAP4-2Q9BYR5 136 aa1.89□□□□□ -2.11
HERC4-209ENST00000473533 MT1AP04731 61 aa1.88□□□□□ -2.11
HERC4-209ENST00000473533 KRTAP20-1Q3LI63 56 aa1.86□□□□□ -2.11
HERC4-209ENST00000473533 KRTAP4-11Q9BYQ6 195 aa1.85□□□□□ -2.11
HERC4-209ENST00000473533 LCE5AQ5TCM9 118 aa1.84□□□□□ -2.11
HERC4-209ENST00000473533 SPRR2FQ96RM1 72 aa1.8□□□□□ -2.12
HERC4-209ENST00000473533 KRTAP5-9P26371 169 aa1.8□□□□□ -2.12
HERC4-209ENST00000473533 LCE3EQ5T5B0 92 aa1.8□□□□□ -2.12
HERC4-209ENST00000473533 LCE3DQ9BYE3 92 aa1.8□□□□□ -2.12
HERC4-209ENST00000473533 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
HERC4-209ENST00000473533 SPRR2EP22531 72 aa1.73□□□□□ -2.13
HERC4-209ENST00000473533 SPRR2BP35325 72 aa1.73□□□□□ -2.13
HERC4-209ENST00000473533 SPRR2AP35326 72 aa1.73□□□□□ -2.13
HERC4-209ENST00000473533 KRTAP6-1Q3LI64 71 aa1.73□□□□□ -2.13
HERC4-209ENST00000473533 LCE4AQ5TA78 99 aa1.72□□□□□ -2.13
HERC4-209ENST00000473533 KRTAP2-2Q9BYT5 123 aa1.71□□□□□ -2.14
HERC4-209ENST00000473533 LCE1AQ5T7P2 110 aa1.7□□□□□ -2.14
HERC4-209ENST00000473533 KRTAP5-3Q6L8H2 238 aa1.7□□□□□ -2.14
HERC4-209ENST00000473533 PRM1P04553 51 aa1.69□□□□□ -2.14
HERC4-209ENST00000473533 GPR98Q8WXG9 6306 aa1.69□□□□□ -2.14
HERC4-209ENST00000473533 KRTAP5-5Q701N2 237 aaPredicted RBP1.68□□□□□ -2.14
HERC4-209ENST00000473533 MUC19Q7Z5P9 8384 aa1.68□□□□□ -2.14
HERC4-209ENST00000473533 SPRR2DP22532 72 aa1.67□□□□□ -2.14
HERC4-209ENST00000473533 MT3P25713 68 aa1.64□□□□□ -2.15
HERC4-209ENST00000473533 KRTAP6-2Q3LI66 62 aa1.61□□□□□ -2.15
HERC4-209ENST00000473533 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
HERC4-209ENST00000473533 MT4P47944 62 aa1.51□□□□□ -2.17
HERC4-209ENST00000473533 KRTAP5-10Q6L8G5 202 aa1.48□□□□□ -2.17
HERC4-209ENST00000473533 KRTAP5-4Q6L8H1 288 aa1.46□□□□□ -2.18
HERC4-209ENST00000473533 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
HERC4-209ENST00000473533 MUC5ACP98088 5654 aa1.39□□□□□ -2.19
HERC4-209ENST00000473533 KRTAP5-2Q701N4 177 aa1.38□□□□□ -2.19
HERC4-209ENST00000473533 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.37□□□□□ -2.19
HERC4-209ENST00000473533 LCE1BQ5T7P3 118 aa1.36□□□□□ -2.19
HERC4-209ENST00000473533 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
HERC4-209ENST00000473533 LCE1EQ5T753 118 aa1.33□□□□□ -2.2
HERC4-209ENST00000473533 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
HERC4-209ENST00000473533 KRTAP5-8O75690 187 aa1.25□□□□□ -2.21
HERC4-209ENST00000473533 KRTAP5-1Q6L8H4 278 aa1.25□□□□□ -2.21
HERC4-209ENST00000473533 LCE1FQ5T754 118 aa1.24□□□□□ -2.21
HERC4-209ENST00000473533 LCE1CQ5T751 118 aa1.23□□□□□ -2.21
HERC4-209ENST00000473533 KRTAP4-4Q9BYR3 166 aa1.22□□□□□ -2.21
HERC4-209ENST00000473533 KRTAP5-11Q6L8G4 156 aa1.21□□□□□ -2.22
HERC4-209ENST00000473533 KRTAP21-2Q3LI59 83 aa1.12□□□□□ -2.23
HERC4-209ENST00000473533 KRTAP21-1Q3LI58 79 aa1.1□□□□□ -2.23
HERC4-209ENST00000473533 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
HERC4-209ENST00000473533 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 13 ms