RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
VIM-203ENST00000469543 INE1O15225 51 aa6.44□□□□□ -1.38
VIM-203ENST00000469543 MACF1Q9UPN3 7388 aaKnown RBP6.43□□□□□ -1.38
VIM-203ENST00000469543 LOC100996750A0A140TA64 210 aa6.43□□□□□ -1.38
VIM-203ENST00000469543 SYNE2Q8WXH0 6885 aaKnown RBP6.34□□□□□ -1.39
VIM-203ENST00000469543 KRTAP2-3P0C7H8 128 aa6.32□□□□□ -1.4
VIM-203ENST00000469543 KRTAP2-4Q9BYR9 128 aa6.32□□□□□ -1.4
VIM-203ENST00000469543 KRTAP2-1Q9BYU5 128 aa6.32□□□□□ -1.4
VIM-203ENST00000469543 MT1GP13640 62 aa6.31□□□□□ -1.4
VIM-203ENST00000469543 CRCT1Q9UGL9 99 aa6.26□□□□□ -1.41
VIM-203ENST00000469543 KRTAP19-3Q7Z4W3 81 aa6.24□□□□□ -1.41
VIM-203ENST00000469543 KRTAP19-4Q3LI73 84 aa6.24□□□□□ -1.41
VIM-203ENST00000469543 MT1MQ8N339 61 aa6.24□□□□□ -1.41
VIM-203ENST00000469543 SPRR2FQ96RM1 72 aa6.2□□□□□ -1.42
VIM-203ENST00000469543 MDN1Q9NU22 5596 aa6.14□□□□□ -1.43
VIM-203ENST00000469543 LCE5AQ5TCM9 118 aa6.07□□□□□ -1.44
VIM-203ENST00000469543 SYNE1Q8NF91 8797 aaKnown RBP6.06□□□□□ -1.44
VIM-203ENST00000469543 KRTAP9-2Q9BYQ4 174 aa5.93□□□□□ -1.46
VIM-203ENST00000469543 LCE3BQ5TA77 95 aa5.79□□□□□ -1.48
VIM-203ENST00000469543 LCE1AQ5T7P2 110 aa5.76□□□□□ -1.49
VIM-203ENST00000469543 KRTAP4-9Q9BYQ8 210 aa5.75□□□□□ -1.49
VIM-203ENST00000469543 OBSCNQ5VST9 7968 aa5.71□□□□□ -1.5
VIM-203ENST00000469543 KRTAP6-1Q3LI64 71 aa5.71□□□□□ -1.5
VIM-203ENST00000469543 KRTAP5-9P26371 169 aa5.67□□□□□ -1.5
VIM-203ENST00000469543 KRTAP12-4P60329 112 aa5.67□□□□□ -1.5
VIM-203ENST00000469543 SPRR2EP22531 72 aa5.63□□□□□ -1.51
VIM-203ENST00000469543 SPRR2BP35325 72 aa5.63□□□□□ -1.51
VIM-203ENST00000469543 SPRR2AP35326 72 aa5.63□□□□□ -1.51
VIM-203ENST00000469543 MT1AP04731 61 aa5.51□□□□□ -1.53
VIM-203ENST00000469543 KRTAP5-5Q701N2 237 aaPredicted RBP5.5□□□□□ -1.53
VIM-203ENST00000469543 SPRR2DP22532 72 aa5.37□□□□□ -1.55
VIM-203ENST00000469543 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.32□□□□□ -1.56
VIM-203ENST00000469543 LCE3DQ9BYE3 92 aa5.32□□□□□ -1.56
VIM-203ENST00000469543 KRTAP9-4Q9BYQ2 154 aa5.23□□□□□ -1.57
VIM-203ENST00000469543 KRTAP6-3Q3LI67 103 aa5.22□□□□□ -1.57
VIM-203ENST00000469543 LCE3EQ5T5B0 92 aa5.2□□□□□ -1.58
VIM-203ENST00000469543 KRTAP9-7A8MTY7 169 aa5.16□□□□□ -1.58
VIM-203ENST00000469543 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.58
VIM-203ENST00000469543 KRTAP9-6A0A140TA67 174 aa5.09□□□□□ -1.59
VIM-203ENST00000469543 NEBP20929 6669 aa5.02□□□□□ -1.61
VIM-203ENST00000469543 PRM1P04553 51 aa4.99□□□□□ -1.61
VIM-203ENST00000469543 MT3P25713 68 aa4.96□□□□□ -1.62
VIM-203ENST00000469543 KRTAP4-6Q9BYQ5 205 aa4.9□□□□□ -1.62
VIM-203ENST00000469543 MT4P47944 62 aa4.87□□□□□ -1.63
VIM-203ENST00000469543 KRTAP5-4Q6L8H1 288 aa4.87□□□□□ -1.63
VIM-203ENST00000469543 HMCN1Q96RW7 5635 aa4.71□□□□□ -1.66
VIM-203ENST00000469543 KRTAP20-2Q3LI61 65 aa4.64□□□□□ -1.67
VIM-203ENST00000469543 LCE1DQ5T752 114 aa4.54□□□□□ -1.68
VIM-203ENST00000469543 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
VIM-203ENST00000469543 KRTAP5-2Q701N4 177 aa4.51□□□□□ -1.69
VIM-203ENST00000469543 KRTAP2-2Q9BYT5 123 aa4.41□□□□□ -1.7
VIM-203ENST00000469543 KRTAP5-3Q6L8H2 238 aa4.4□□□□□ -1.7
VIM-203ENST00000469543 KRTAP20-1Q3LI63 56 aa4.32□□□□□ -1.72
VIM-203ENST00000469543 MUC5ACP98088 5654 aa4.31□□□□□ -1.72
VIM-203ENST00000469543 LCE1BQ5T7P3 118 aa4.18□□□□□ -1.74
VIM-203ENST00000469543 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
VIM-203ENST00000469543 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
VIM-203ENST00000469543 KRTAP5-1Q6L8H4 278 aa3.93□□□□□ -1.78
VIM-203ENST00000469543 KRTAP5-10Q6L8G5 202 aa3.91□□□□□ -1.78
VIM-203ENST00000469543 KRTAP4-11Q9BYQ6 195 aa3.88□□□□□ -1.79
VIM-203ENST00000469543 LCE1CQ5T751 118 aa3.85□□□□□ -1.79
VIM-203ENST00000469543 KRTAP4-12Q9BQ66 201 aa3.83□□□□□ -1.8
VIM-203ENST00000469543 KRTAP9-9Q9BYP9 154 aa3.83□□□□□ -1.8
VIM-203ENST00000469543 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.81
VIM-203ENST00000469543 KRTAP5-8O75690 187 aa3.71□□□□□ -1.82
VIM-203ENST00000469543 KRTAP21-2Q3LI59 83 aa3.67□□□□□ -1.82
VIM-203ENST00000469543 MUC5BQ9HC84 5762 aaPredicted RBP3.59□□□□□ -1.83
VIM-203ENST00000469543 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.56□□□□□ -1.84
VIM-203ENST00000469543 MUC19Q7Z5P9 8384 aa3.56□□□□□ -1.84
VIM-203ENST00000469543 KRTAP4-4Q9BYR3 166 aa3.52□□□□□ -1.85
VIM-203ENST00000469543 KRTAP5-7Q6L8G8 165 aa3.5□□□□□ -1.85
VIM-203ENST00000469543 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
VIM-203ENST00000469543 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
VIM-203ENST00000469543 KRTAP5-11Q6L8G4 156 aa3.29□□□□□ -1.88
VIM-203ENST00000469543 KRTAP21-1Q3LI58 79 aa3.03□□□□□ -1.92
VIM-203ENST00000469543 PHGR1C9JFL3 82 aa2.89□□□□□ -1.95
VIM-203ENST00000469543 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.98
VIM-203ENST00000469543 MUC16Q8WXI7 14507 aa1.9□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 88.7 ms