RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 CRCT1Q9UGL9 99 aa6.12□□□□□ -1.43
MCF2L-221ENST00000469415 KRTAP19-6Q3LI70 58 aa6.09□□□□□ -1.43
MCF2L-221ENST00000469415 LOC100996750A0A140TA64 210 aa6.07□□□□□ -1.44
MCF2L-221ENST00000469415 MACF1Q9UPN3 7388 aaKnown RBP5.99□□□□□ -1.45
MCF2L-221ENST00000469415 MT1GP13640 62 aa5.97□□□□□ -1.45
MCF2L-221ENST00000469415 LCE2DQ5TA82 110 aaPredicted RBP5.97□□□□□ -1.45
MCF2L-221ENST00000469415 SYNE2Q8WXH0 6885 aaKnown RBP5.95□□□□□ -1.46
MCF2L-221ENST00000469415 SYNE1Q8NF91 8797 aaKnown RBP5.92□□□□□ -1.46
MCF2L-221ENST00000469415 SPRR2FQ96RM1 72 aa5.88□□□□□ -1.47
MCF2L-221ENST00000469415 KRTAP2-3P0C7H8 128 aa5.82□□□□□ -1.48
MCF2L-221ENST00000469415 KRTAP2-4Q9BYR9 128 aa5.82□□□□□ -1.48
MCF2L-221ENST00000469415 KRTAP2-1Q9BYU5 128 aa5.82□□□□□ -1.48
MCF2L-221ENST00000469415 MT1MQ8N339 61 aa5.81□□□□□ -1.48
MCF2L-221ENST00000469415 KRTAP19-3Q7Z4W3 81 aa5.81□□□□□ -1.48
MCF2L-221ENST00000469415 MDN1Q9NU22 5596 aa5.79□□□□□ -1.48
MCF2L-221ENST00000469415 OBSCNQ5VST9 7968 aa5.76□□□□□ -1.49
MCF2L-221ENST00000469415 KRTAP19-4Q3LI73 84 aa5.64□□□□□ -1.51
MCF2L-221ENST00000469415 LCE5AQ5TCM9 118 aa5.57□□□□□ -1.52
MCF2L-221ENST00000469415 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
MCF2L-221ENST00000469415 KRTAP9-2Q9BYQ4 174 aa5.53□□□□□ -1.52
MCF2L-221ENST00000469415 KRTAP4-9Q9BYQ8 210 aa5.49□□□□□ -1.53
MCF2L-221ENST00000469415 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
MCF2L-221ENST00000469415 KRTAP6-1Q3LI64 71 aa5.34□□□□□ -1.56
MCF2L-221ENST00000469415 SPRR2EP22531 72 aa5.33□□□□□ -1.56
MCF2L-221ENST00000469415 SPRR2BP35325 72 aa5.33□□□□□ -1.56
MCF2L-221ENST00000469415 SPRR2AP35326 72 aa5.33□□□□□ -1.56
MCF2L-221ENST00000469415 LCE1AQ5T7P2 110 aa5.33□□□□□ -1.56
MCF2L-221ENST00000469415 KRTAP5-9P26371 169 aa5.13□□□□□ -1.59
MCF2L-221ENST00000469415 MT1AP04731 61 aa5.12□□□□□ -1.59
MCF2L-221ENST00000469415 SPRR2DP22532 72 aa5.07□□□□□ -1.6
MCF2L-221ENST00000469415 LCE3DQ9BYE3 92 aa5.02□□□□□ -1.61
MCF2L-221ENST00000469415 KRTAP5-5Q701N2 237 aaPredicted RBP4.98□□□□□ -1.61
MCF2L-221ENST00000469415 KRTAP9-7A8MTY7 169 aa4.96□□□□□ -1.62
MCF2L-221ENST00000469415 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.93□□□□□ -1.62
MCF2L-221ENST00000469415 LCE3EQ5T5B0 92 aa4.9□□□□□ -1.62
MCF2L-221ENST00000469415 PRM1P04553 51 aa4.86□□□□□ -1.63
MCF2L-221ENST00000469415 KRTAP6-2Q3LI66 62 aa4.84□□□□□ -1.63
MCF2L-221ENST00000469415 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
MCF2L-221ENST00000469415 KRTAP6-3Q3LI67 103 aa4.78□□□□□ -1.64
MCF2L-221ENST00000469415 KRTAP9-6A0A140TA67 174 aa4.73□□□□□ -1.65
MCF2L-221ENST00000469415 MT4P47944 62 aa4.66□□□□□ -1.66
MCF2L-221ENST00000469415 MT3P25713 68 aa4.64□□□□□ -1.67
MCF2L-221ENST00000469415 NEBP20929 6669 aa4.64□□□□□ -1.67
MCF2L-221ENST00000469415 KRTAP4-6Q9BYQ5 205 aa4.59□□□□□ -1.67
MCF2L-221ENST00000469415 LCE1EQ5T753 118 aa4.47□□□□□ -1.69
MCF2L-221ENST00000469415 HMCN1Q96RW7 5635 aa4.4□□□□□ -1.7
MCF2L-221ENST00000469415 KRTAP5-4Q6L8H1 288 aa4.38□□□□□ -1.71
MCF2L-221ENST00000469415 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
MCF2L-221ENST00000469415 KRTAP20-2Q3LI61 65 aa4.29□□□□□ -1.72
MCF2L-221ENST00000469415 MUC19Q7Z5P9 8384 aa4.27□□□□□ -1.73
MCF2L-221ENST00000469415 LCE1DQ5T752 114 aa4.24□□□□□ -1.73
MCF2L-221ENST00000469415 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
MCF2L-221ENST00000469415 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
MCF2L-221ENST00000469415 KRTAP5-2Q701N4 177 aa4.06□□□□□ -1.76
MCF2L-221ENST00000469415 MUC5ACP98088 5654 aa4.06□□□□□ -1.76
MCF2L-221ENST00000469415 KRTAP5-3Q6L8H2 238 aa3.99□□□□□ -1.77
MCF2L-221ENST00000469415 KRTAP20-1Q3LI63 56 aa3.96□□□□□ -1.78
MCF2L-221ENST00000469415 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
MCF2L-221ENST00000469415 KRTAP4-11Q9BYQ6 195 aa3.76□□□□□ -1.81
MCF2L-221ENST00000469415 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
MCF2L-221ENST00000469415 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
MCF2L-221ENST00000469415 KRTAP5-1Q6L8H4 278 aa3.57□□□□□ -1.84
MCF2L-221ENST00000469415 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
MCF2L-221ENST00000469415 LCE1CQ5T751 118 aa3.48□□□□□ -1.85
MCF2L-221ENST00000469415 MUC5BQ9HC84 5762 aaPredicted RBP3.46□□□□□ -1.85
MCF2L-221ENST00000469415 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
MCF2L-221ENST00000469415 KRTAP5-8O75690 187 aa3.39□□□□□ -1.87
MCF2L-221ENST00000469415 KRTAP21-2Q3LI59 83 aa3.35□□□□□ -1.87
MCF2L-221ENST00000469415 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
MCF2L-221ENST00000469415 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
MCF2L-221ENST00000469415 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
MCF2L-221ENST00000469415 KRTAP5-7Q6L8G8 165 aa3.07□□□□□ -1.92
MCF2L-221ENST00000469415 KRTAP9-9Q9BYP9 154 aa3.03□□□□□ -1.92
MCF2L-221ENST00000469415 KRTAP5-11Q6L8G4 156 aa2.98□□□□□ -1.93
MCF2L-221ENST00000469415 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
MCF2L-221ENST00000469415 PHGR1C9JFL3 82 aa2.63□□□□□ -1.99
MCF2L-221ENST00000469415 AHNAKQ09666 5890 aaKnown RBP2.61□□□□□ -1.99
MCF2L-221ENST00000469415 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 125 ms