RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
VPS52-213ENST00000461743 PP632Q6XCG6 107 aa4.55□□□□□ -1.68
VPS52-213ENST00000461743 A0A0A0MQY5 61 aa4.54□□□□□ -1.68
VPS52-213ENST00000461743 KRTAP20-1Q3LI63 56 aa4.54□□□□□ -1.68
VPS52-213ENST00000461743 KRTAP2-3P0C7H8 128 aa4.47□□□□□ -1.69
VPS52-213ENST00000461743 KRTAP2-4Q9BYR9 128 aa4.47□□□□□ -1.69
VPS52-213ENST00000461743 TNP1P09430 55 aa4.46□□□□□ -1.7
VPS52-213ENST00000461743 SPRR2DP22532 72 aa4.45□□□□□ -1.7
VPS52-213ENST00000461743 KRTAP19-7Q3SYF9 63 aa4.45□□□□□ -1.7
VPS52-213ENST00000461743 MT1EP04732 61 aa4.41□□□□□ -1.7
VPS52-213ENST00000461743 KRTAP23-1A1A580 65 aa4.37□□□□□ -1.71
VPS52-213ENST00000461743 KRTAP19-3Q7Z4W3 81 aa4.36□□□□□ -1.71
VPS52-213ENST00000461743 KRTAP19-5Q3LI72 72 aa4.35□□□□□ -1.71
VPS52-213ENST00000461743 LCE3AQ5TA76 89 aa4.34□□□□□ -1.71
VPS52-213ENST00000461743 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.71
VPS52-213ENST00000461743 LOC100996750A0A140TA64 210 aa4.33□□□□□ -1.72
VPS52-213ENST00000461743 KRTAP4-6Q9BYQ5 205 aa4.33□□□□□ -1.72
VPS52-213ENST00000461743 KRTAP2-2Q9BYT5 123 aa4.33□□□□□ -1.72
VPS52-213ENST00000461743 KRTAP2-1Q9BYU5 128 aa4.33□□□□□ -1.72
VPS52-213ENST00000461743 SPRR5A0A1B0GTR4 108 aa4.32□□□□□ -1.72
VPS52-213ENST00000461743 LCE3BQ5TA77 95 aa4.31□□□□□ -1.72
VPS52-213ENST00000461743 MT1GP13640 62 aa4.27□□□□□ -1.73
VPS52-213ENST00000461743 MT1LQ93083 61 aa4.24□□□□□ -1.73
VPS52-213ENST00000461743 KRTAP12-3P60328 96 aa4.2□□□□□ -1.74
VPS52-213ENST00000461743 MT1MQ8N339 61 aa4.19□□□□□ -1.74
VPS52-213ENST00000461743 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
VPS52-213ENST00000461743 KRTAP19-4Q3LI73 84 aa4.08□□□□□ -1.76
VPS52-213ENST00000461743 INE1O15225 51 aa4.07□□□□□ -1.76
VPS52-213ENST00000461743 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
VPS52-213ENST00000461743 KRTAP4-12Q9BQ66 201 aa3.99□□□□□ -1.77
VPS52-213ENST00000461743 LCE4AQ5TA78 99 aa3.98□□□□□ -1.77
VPS52-213ENST00000461743 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
VPS52-213ENST00000461743 KRTAP5-4Q6L8H1 288 aa3.93□□□□□ -1.78
VPS52-213ENST00000461743 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.79
VPS52-213ENST00000461743 LCE1DQ5T752 114 aa3.89□□□□□ -1.79
VPS52-213ENST00000461743 LCE3CQ5T5A8 94 aa3.88□□□□□ -1.79
VPS52-213ENST00000461743 HMCN1Q96RW7 5635 aa3.87□□□□□ -1.79
VPS52-213ENST00000461743 KRTAP5-5Q701N2 237 aaPredicted RBP3.85□□□□□ -1.79
VPS52-213ENST00000461743 MT4P47944 62 aa3.84□□□□□ -1.79
VPS52-213ENST00000461743 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
VPS52-213ENST00000461743 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
VPS52-213ENST00000461743 GPR98Q8WXG9 6306 aa3.72□□□□□ -1.81
VPS52-213ENST00000461743 KRTAP12-4P60329 112 aa3.7□□□□□ -1.82
VPS52-213ENST00000461743 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
VPS52-213ENST00000461743 KRTAP20-2Q3LI61 65 aa3.68□□□□□ -1.82
VPS52-213ENST00000461743 SYNE1Q8NF91 8797 aaKnown RBP3.65□□□□□ -1.82
VPS52-213ENST00000461743 MT1AP04731 61 aa3.63□□□□□ -1.83
VPS52-213ENST00000461743 KRTAP9-6A8MVA2 160 aa3.62□□□□□ -1.83
VPS52-213ENST00000461743 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
VPS52-213ENST00000461743 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
VPS52-213ENST00000461743 KRTAP5-10Q6L8G5 202 aa3.55□□□□□ -1.84
VPS52-213ENST00000461743 KRTAP5-2Q701N4 177 aa3.47□□□□□ -1.85
VPS52-213ENST00000461743 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
VPS52-213ENST00000461743 KRTAP4-2Q9BYR5 136 aa3.4□□□□□ -1.87
VPS52-213ENST00000461743 KRTAP4-11Q9BYQ6 195 aa3.39□□□□□ -1.87
VPS52-213ENST00000461743 KRTAP6-2Q3LI66 62 aa3.36□□□□□ -1.87
VPS52-213ENST00000461743 MT3P25713 68 aa3.31□□□□□ -1.88
VPS52-213ENST00000461743 KRTAP5-8O75690 187 aa3.19□□□□□ -1.9
VPS52-213ENST00000461743 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
VPS52-213ENST00000461743 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
VPS52-213ENST00000461743 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
VPS52-213ENST00000461743 LCE1EQ5T753 118 aa3.02□□□□□ -1.93
VPS52-213ENST00000461743 MUC5BQ9HC84 5762 aaPredicted RBP3.01□□□□□ -1.93
VPS52-213ENST00000461743 AHNAKQ09666 5890 aaKnown RBP2.97□□□□□ -1.93
VPS52-213ENST00000461743 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
VPS52-213ENST00000461743 LCE1CQ5T751 118 aa2.8□□□□□ -1.96
VPS52-213ENST00000461743 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
VPS52-213ENST00000461743 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
VPS52-213ENST00000461743 PRM1P04553 51 aa2.74□□□□□ -1.97
VPS52-213ENST00000461743 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
VPS52-213ENST00000461743 KRTAP5-11Q6L8G4 156 aa2.54□□□□□ -2
VPS52-213ENST00000461743 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
VPS52-213ENST00000461743 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
VPS52-213ENST00000461743 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
VPS52-213ENST00000461743 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
VPS52-213ENST00000461743 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
VPS52-213ENST00000461743 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
VPS52-213ENST00000461743 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms