RNA–Protein interactions for RNA: ENST00000448611.6

LMNA-208, Transcript of lamin A/C, human

TSL 2 BASIC

Gene LMNA, Length 1,943 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-208	ENST00000448611	LCE3C	Q5T5A8	94 aa		6.32	□□□□□ -1.4
LMNA-208	ENST00000448611	KRTAP6-3	Q3LI67	103 aa		6.3	□□□□□ -1.4
LMNA-208	ENST00000448611	MT1L	Q93083	61 aa		6.28	□□□□□ -1.4
LMNA-208	ENST00000448611	KRTAP5-9	P26371	169 aa		6.24	□□□□□ -1.41
LMNA-208	ENST00000448611	SPRR2F	Q96RM1	72 aa		6.24	□□□□□ -1.41
LMNA-208	ENST00000448611	KRTAP19-4	Q3LI73	84 aa		6.23	□□□□□ -1.41
LMNA-208	ENST00000448611	KRTAP4-7	Q9BYR0	210 aa		6.15	□□□□□ -1.43
LMNA-208	ENST00000448611	MUC12	Q9UKN1	5478 aa		6.12	□□□□□ -1.43
LMNA-208	ENST00000448611	KRTAP19-3	Q7Z4W3	81 aa		6.07	□□□□□ -1.44
LMNA-208	ENST00000448611	KRTAP9-6	A8MVA2	160 aa		6.03	□□□□□ -1.44
LMNA-208	ENST00000448611	MDN1	Q9NU22	5596 aa		6.03	□□□□□ -1.44
LMNA-208	ENST00000448611	MT1G	P13640	62 aa		6.01	□□□□□ -1.45
LMNA-208	ENST00000448611	SPRR2E	P22531	72 aa		6.01	□□□□□ -1.45
LMNA-208	ENST00000448611	SPRR2B	P35325	72 aa		6.01	□□□□□ -1.45
LMNA-208	ENST00000448611	SPRR2A	P35326	72 aa		6.01	□□□□□ -1.45
LMNA-208	ENST00000448611	LCE1A	Q5T7P2	110 aa		5.98	□□□□□ -1.45
LMNA-208	ENST00000448611	MT1M	Q8N339	61 aa		5.98	□□□□□ -1.45
LMNA-208	ENST00000448611	LCE5A	Q5TCM9	118 aa		5.94	□□□□□ -1.46
LMNA-208	ENST00000448611	KRTAP4-3	Q9BYR4	195 aa		5.91	□□□□□ -1.46
LMNA-208	ENST00000448611	NEB	P20929	6669 aa		5.9	□□□□□ -1.46
LMNA-208	ENST00000448611	SPRR2D	P22532	72 aa		5.79	□□□□□ -1.48
LMNA-208	ENST00000448611	LOC100996750	A0A140TA64	210 aa		5.76	□□□□□ -1.49
LMNA-208	ENST00000448611	DST	Q03001	7570 aa	Known RBP	5.69	□□□□□ -1.5
LMNA-208	ENST00000448611	KRTAP2-3	P0C7H8	128 aa		5.64	□□□□□ -1.51
LMNA-208	ENST00000448611	KRTAP2-4	Q9BYR9	128 aa		5.64	□□□□□ -1.51
LMNA-208	ENST00000448611	KRTAP2-1	Q9BYU5	128 aa		5.64	□□□□□ -1.51
LMNA-208	ENST00000448611	KRTAP20-1	Q3LI63	56 aa		5.6	□□□□□ -1.51
LMNA-208	ENST00000448611	LCE3B	Q5TA77	95 aa		5.59	□□□□□ -1.51
LMNA-208	ENST00000448611	KRTAP2-2	Q9BYT5	123 aa		5.45	□□□□□ -1.54
LMNA-208	ENST00000448611	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.38	□□□□□ -1.55
LMNA-208	ENST00000448611	MT1A	P04731	61 aa		5.32	□□□□□ -1.56
LMNA-208	ENST00000448611	KRTAP6-1	Q3LI64	71 aa		5.3	□□□□□ -1.56
LMNA-208	ENST00000448611	INE1	O15225	51 aa		5.29	□□□□□ -1.56
LMNA-208	ENST00000448611	KRTAP5-4	Q6L8H1	288 aa		5.11	□□□□□ -1.59
LMNA-208	ENST00000448611	LCE4A	Q5TA78	99 aa		5.11	□□□□□ -1.59
LMNA-208	ENST00000448611	KRTAP4-9	Q9BYQ8	210 aa		5.1	□□□□□ -1.59
LMNA-208	ENST00000448611	SYNE1	Q8NF91	8797 aa	Known RBP	5.09	□□□□□ -1.59
LMNA-208	ENST00000448611	MT4	P47944	62 aa		5.06	□□□□□ -1.6
LMNA-208	ENST00000448611	KRTAP9-4	Q9BYQ2	154 aa		5.03	□□□□□ -1.6
LMNA-208	ENST00000448611	LCE1D	Q5T752	114 aa		5.01	□□□□□ -1.61
LMNA-208	ENST00000448611	KRTAP4-6	Q9BYQ5	205 aa		4.96	□□□□□ -1.62
LMNA-208	ENST00000448611	KRTAP12-4	P60329	112 aa		4.93	□□□□□ -1.62
LMNA-208	ENST00000448611	HMCN1	Q96RW7	5635 aa		4.88	□□□□□ -1.63
LMNA-208	ENST00000448611	KRTAP6-2	Q3LI66	62 aa		4.84	□□□□□ -1.64
LMNA-208	ENST00000448611	KRTAP20-2	Q3LI61	65 aa		4.82	□□□□□ -1.64
LMNA-208	ENST00000448611	MT3	P25713	68 aa		4.8	□□□□□ -1.64
LMNA-208	ENST00000448611	LCE3D	Q9BYE3	92 aa		4.77	□□□□□ -1.65
LMNA-208	ENST00000448611	LCE3E	Q5T5B0	92 aa		4.66	□□□□□ -1.66
LMNA-208	ENST00000448611	KRTAP5-3	Q6L8H2	238 aa		4.64	□□□□□ -1.67
LMNA-208	ENST00000448611	KRTAP5-2	Q701N4	177 aa		4.6	□□□□□ -1.67
LMNA-208	ENST00000448611	OBSCN	Q5VST9	7968 aa		4.43	□□□□□ -1.7
LMNA-208	ENST00000448611	AHNAK2	Q8IVF2	5795 aa		4.41	□□□□□ -1.7
LMNA-208	ENST00000448611	KRTAP5-10	Q6L8G5	202 aa		4.35	□□□□□ -1.71
LMNA-208	ENST00000448611	GPR98	Q8WXG9	6306 aa		4.3	□□□□□ -1.72
LMNA-208	ENST00000448611	KRTAP4-11	Q9BYQ6	195 aa		4.28	□□□□□ -1.72
LMNA-208	ENST00000448611	PRM1	P04553	51 aa		4.19	□□□□□ -1.74
LMNA-208	ENST00000448611	KRTAP5-8	O75690	187 aa		4.11	□□□□□ -1.75
LMNA-208	ENST00000448611	LCE1E	Q5T753	118 aa		4.11	□□□□□ -1.75
LMNA-208	ENST00000448611	KRTAP5-7	Q6L8G8	165 aa		4.09	□□□□□ -1.76
LMNA-208	ENST00000448611	KRTAP5-1	Q6L8H4	278 aa		4.02	□□□□□ -1.77
LMNA-208	ENST00000448611	MUC5AC	P98088	5654 aa		3.94	□□□□□ -1.78
LMNA-208	ENST00000448611	LCE1B	Q5T7P3	118 aa		3.88	□□□□□ -1.79
LMNA-208	ENST00000448611	KRTAP4-2	Q9BYR5	136 aa		3.85	□□□□□ -1.79
LMNA-208	ENST00000448611	LCE1C	Q5T751	118 aa		3.84	□□□□□ -1.79
LMNA-208	ENST00000448611	KRTAP9-9	Q9BYP9	154 aa		3.81	□□□□□ -1.8
LMNA-208	ENST00000448611	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.62	□□□□□ -1.83
LMNA-208	ENST00000448611	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.59	□□□□□ -1.83
LMNA-208	ENST00000448611	KRTAP21-2	Q3LI59	83 aa		3.46	□□□□□ -1.85
LMNA-208	ENST00000448611	AHNAK	Q09666	5890 aa	Known RBP	3.4	□□□□□ -1.87
LMNA-208	ENST00000448611	KRTAP5-11	Q6L8G4	156 aa		3.36	□□□□□ -1.87
LMNA-208	ENST00000448611	KRTAP4-12	Q9BQ66	201 aa		3.27	□□□□□ -1.89
LMNA-208	ENST00000448611	LCE1F	Q5T754	118 aa		3.1	□□□□□ -1.91
LMNA-208	ENST00000448611	KRTAP4-4	Q9BYR3	166 aa		3.07	□□□□□ -1.92
LMNA-208	ENST00000448611	PHGR1	C9JFL3	82 aa		2.89	□□□□□ -1.95
LMNA-208	ENST00000448611	MUC19	Q7Z5P9	8384 aa		2.67	□□□□□ -1.98
LMNA-208	ENST00000448611	KRTAP21-1	Q3LI58	79 aa		2.6	□□□□□ -1.99
LMNA-208	ENST00000448611	MUC16	Q8WXI7	14507 aa		1.87	□□□□□ -2.11

Retrieved 77 of 20,778 RNA–protein pairs in 223.4 ms