RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 SPRR2EP22531 72 aa5.28□□□□□ -1.56
TCOF1-206ENST00000445265 SPRR2BP35325 72 aa5.28□□□□□ -1.56
TCOF1-206ENST00000445265 SPRR2AP35326 72 aa5.28□□□□□ -1.56
TCOF1-206ENST00000445265 KRTAP2-3P0C7H8 128 aa5.24□□□□□ -1.57
TCOF1-206ENST00000445265 KRTAP2-4Q9BYR9 128 aa5.24□□□□□ -1.57
TCOF1-206ENST00000445265 KRTAP2-1Q9BYU5 128 aa5.24□□□□□ -1.57
TCOF1-206ENST00000445265 LCE3DQ9BYE3 92 aa5.22□□□□□ -1.57
TCOF1-206ENST00000445265 LOC100996750A0A140TA64 210 aa5.17□□□□□ -1.58
TCOF1-206ENST00000445265 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
TCOF1-206ENST00000445265 KRTAP4-3Q9BYR4 195 aa5.16□□□□□ -1.58
TCOF1-206ENST00000445265 KRTAP9-6A8MVA2 160 aa5.15□□□□□ -1.58
TCOF1-206ENST00000445265 SPRR2DP22532 72 aa5.09□□□□□ -1.59
TCOF1-206ENST00000445265 LCE2DQ5TA82 110 aaPredicted RBP4.97□□□□□ -1.61
TCOF1-206ENST00000445265 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.62
TCOF1-206ENST00000445265 MT1AP04731 61 aa4.89□□□□□ -1.63
TCOF1-206ENST00000445265 USH2AO75445 5202 aa4.87□□□□□ -1.63
TCOF1-206ENST00000445265 MT3P25713 68 aa4.83□□□□□ -1.64
TCOF1-206ENST00000445265 KRTAP9-2Q9BYQ4 174 aa4.82□□□□□ -1.64
TCOF1-206ENST00000445265 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
TCOF1-206ENST00000445265 PRM1P04553 51 aa4.79□□□□□ -1.64
TCOF1-206ENST00000445265 KRTAP4-9Q9BYQ8 210 aa4.76□□□□□ -1.65
TCOF1-206ENST00000445265 KMT2DO14686 5537 aa4.74□□□□□ -1.65
TCOF1-206ENST00000445265 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
TCOF1-206ENST00000445265 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
TCOF1-206ENST00000445265 LCE1AQ5T7P2 110 aa4.62□□□□□ -1.67
TCOF1-206ENST00000445265 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
TCOF1-206ENST00000445265 DSTQ03001 7570 aaKnown RBP4.52□□□□□ -1.69
TCOF1-206ENST00000445265 SYNE2Q8WXH0 6885 aaKnown RBP4.51□□□□□ -1.69
TCOF1-206ENST00000445265 KRTAP9-4Q9BYQ2 154 aa4.5□□□□□ -1.69
TCOF1-206ENST00000445265 MT4P47944 62 aa4.47□□□□□ -1.69
TCOF1-206ENST00000445265 SSPOA2VEC9 5147 aa4.46□□□□□ -1.7
TCOF1-206ENST00000445265 KRTAP9-6A0A140TA67 174 aa4.44□□□□□ -1.7
TCOF1-206ENST00000445265 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
TCOF1-206ENST00000445265 MUC12Q9UKN1 5478 aa4.39□□□□□ -1.71
TCOF1-206ENST00000445265 KRTAP6-3Q3LI67 103 aa4.38□□□□□ -1.71
TCOF1-206ENST00000445265 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
TCOF1-206ENST00000445265 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
TCOF1-206ENST00000445265 MACF1Q9UPN3 7388 aaKnown RBP4.28□□□□□ -1.72
TCOF1-206ENST00000445265 LCE1BQ5T7P3 118 aa4.24□□□□□ -1.73
TCOF1-206ENST00000445265 KRTAP5-9P26371 169 aa4.23□□□□□ -1.73
TCOF1-206ENST00000445265 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.23□□□□□ -1.73
TCOF1-206ENST00000445265 LCE4AQ5TA78 99 aa4.15□□□□□ -1.75
TCOF1-206ENST00000445265 KRTAP2-2Q9BYT5 123 aa3.97□□□□□ -1.77
TCOF1-206ENST00000445265 KRTAP20-1Q3LI63 56 aa3.92□□□□□ -1.78
TCOF1-206ENST00000445265 MDN1Q9NU22 5596 aa3.91□□□□□ -1.78
TCOF1-206ENST00000445265 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.78
TCOF1-206ENST00000445265 KRTAP4-6Q9BYQ5 205 aa3.78□□□□□ -1.8
TCOF1-206ENST00000445265 KRTAP20-2Q3LI61 65 aa3.75□□□□□ -1.81
TCOF1-206ENST00000445265 NEBP20929 6669 aa3.7□□□□□ -1.82
TCOF1-206ENST00000445265 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
TCOF1-206ENST00000445265 KRTAP5-4Q6L8H1 288 aa3.5□□□□□ -1.85
TCOF1-206ENST00000445265 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
TCOF1-206ENST00000445265 MUC19Q7Z5P9 8384 aa3.38□□□□□ -1.87
TCOF1-206ENST00000445265 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
TCOF1-206ENST00000445265 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
TCOF1-206ENST00000445265 KRTAP9-9Q9BYP9 154 aa3.23□□□□□ -1.89
TCOF1-206ENST00000445265 KRTAP5-2Q701N4 177 aa3.19□□□□□ -1.9
TCOF1-206ENST00000445265 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
TCOF1-206ENST00000445265 GPR98Q8WXG9 6306 aa3.14□□□□□ -1.91
TCOF1-206ENST00000445265 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
TCOF1-206ENST00000445265 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.91
TCOF1-206ENST00000445265 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
TCOF1-206ENST00000445265 KRTAP5-10Q6L8G5 202 aa3.06□□□□□ -1.92
TCOF1-206ENST00000445265 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
TCOF1-206ENST00000445265 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
TCOF1-206ENST00000445265 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.96
TCOF1-206ENST00000445265 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
TCOF1-206ENST00000445265 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
TCOF1-206ENST00000445265 KRTAP21-2Q3LI59 83 aa2.67□□□□□ -1.98
TCOF1-206ENST00000445265 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.99
TCOF1-206ENST00000445265 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
TCOF1-206ENST00000445265 MUC5BQ9HC84 5762 aaPredicted RBP2.57□□□□□ -2
TCOF1-206ENST00000445265 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
TCOF1-206ENST00000445265 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
TCOF1-206ENST00000445265 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
TCOF1-206ENST00000445265 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
TCOF1-206ENST00000445265 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 8.7 ms