RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 MDN1Q9NU22 5596 aa5.03□□□□□ -1.6
LIMD1-202ENST00000440097 MT1EP04732 61 aa4.99□□□□□ -1.61
LIMD1-202ENST00000440097 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
LIMD1-202ENST00000440097 KRTAP9-6A8MVA2 160 aa4.94□□□□□ -1.62
LIMD1-202ENST00000440097 MT1LQ93083 61 aa4.94□□□□□ -1.62
LIMD1-202ENST00000440097 SPRR2FQ96RM1 72 aa4.89□□□□□ -1.63
LIMD1-202ENST00000440097 KRTAP9-6A0A140TA67 174 aa4.87□□□□□ -1.63
LIMD1-202ENST00000440097 KRTAP2-3P0C7H8 128 aa4.84□□□□□ -1.63
LIMD1-202ENST00000440097 KRTAP2-4Q9BYR9 128 aa4.84□□□□□ -1.63
LIMD1-202ENST00000440097 KRTAP2-1Q9BYU5 128 aa4.84□□□□□ -1.63
LIMD1-202ENST00000440097 KRTAP19-4Q3LI73 84 aa4.82□□□□□ -1.64
LIMD1-202ENST00000440097 KRTAP19-3Q7Z4W3 81 aa4.76□□□□□ -1.65
LIMD1-202ENST00000440097 KRTAP4-3Q9BYR4 195 aa4.75□□□□□ -1.65
LIMD1-202ENST00000440097 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.73□□□□□ -1.65
LIMD1-202ENST00000440097 MT1GP13640 62 aa4.72□□□□□ -1.65
LIMD1-202ENST00000440097 MT1MQ8N339 61 aa4.7□□□□□ -1.66
LIMD1-202ENST00000440097 LOC100996750A0A140TA64 210 aa4.66□□□□□ -1.66
LIMD1-202ENST00000440097 LCE5AQ5TCM9 118 aa4.62□□□□□ -1.67
LIMD1-202ENST00000440097 SYNE1Q8NF91 8797 aaKnown RBP4.58□□□□□ -1.68
LIMD1-202ENST00000440097 SPRR2EP22531 72 aa4.58□□□□□ -1.68
LIMD1-202ENST00000440097 SPRR2BP35325 72 aa4.58□□□□□ -1.68
LIMD1-202ENST00000440097 SPRR2AP35326 72 aa4.58□□□□□ -1.68
LIMD1-202ENST00000440097 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
LIMD1-202ENST00000440097 KRTAP9-7A8MTY7 169 aa4.51□□□□□ -1.69
LIMD1-202ENST00000440097 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
LIMD1-202ENST00000440097 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
LIMD1-202ENST00000440097 KRTAP6-3Q3LI67 103 aa4.42□□□□□ -1.7
LIMD1-202ENST00000440097 NEBP20929 6669 aa4.42□□□□□ -1.7
LIMD1-202ENST00000440097 SPRR2DP22532 72 aa4.38□□□□□ -1.71
LIMD1-202ENST00000440097 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
LIMD1-202ENST00000440097 LCE3BQ5TA77 95 aa4.23□□□□□ -1.73
LIMD1-202ENST00000440097 KRTAP6-1Q3LI64 71 aa4.2□□□□□ -1.74
LIMD1-202ENST00000440097 MT1AP04731 61 aa4.16□□□□□ -1.74
LIMD1-202ENST00000440097 KRTAP5-5Q701N2 237 aaPredicted RBP4.14□□□□□ -1.75
LIMD1-202ENST00000440097 KRTAP4-9Q9BYQ8 210 aa4.12□□□□□ -1.75
LIMD1-202ENST00000440097 KRTAP2-2Q9BYT5 123 aa4.09□□□□□ -1.75
LIMD1-202ENST00000440097 MT4P47944 62 aa4.01□□□□□ -1.77
LIMD1-202ENST00000440097 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
LIMD1-202ENST00000440097 KRTAP9-4Q9BYQ2 154 aa3.94□□□□□ -1.78
LIMD1-202ENST00000440097 PRM1P04553 51 aa3.93□□□□□ -1.78
LIMD1-202ENST00000440097 KRTAP20-1Q3LI63 56 aa3.93□□□□□ -1.78
LIMD1-202ENST00000440097 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
LIMD1-202ENST00000440097 HMCN1Q96RW7 5635 aa3.9□□□□□ -1.79
LIMD1-202ENST00000440097 KRTAP4-6Q9BYQ5 205 aa3.89□□□□□ -1.79
LIMD1-202ENST00000440097 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
LIMD1-202ENST00000440097 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
LIMD1-202ENST00000440097 KRTAP5-4Q6L8H1 288 aa3.8□□□□□ -1.8
LIMD1-202ENST00000440097 MT3P25713 68 aa3.79□□□□□ -1.8
LIMD1-202ENST00000440097 LCE1DQ5T752 114 aa3.77□□□□□ -1.81
LIMD1-202ENST00000440097 LCE4AQ5TA78 99 aa3.7□□□□□ -1.82
LIMD1-202ENST00000440097 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
LIMD1-202ENST00000440097 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
LIMD1-202ENST00000440097 KRTAP5-2Q701N4 177 aa3.49□□□□□ -1.85
LIMD1-202ENST00000440097 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
LIMD1-202ENST00000440097 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
LIMD1-202ENST00000440097 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
LIMD1-202ENST00000440097 MUC5ACP98088 5654 aa3.27□□□□□ -1.89
LIMD1-202ENST00000440097 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
LIMD1-202ENST00000440097 KRTAP4-11Q9BYQ6 195 aa3.17□□□□□ -1.9
LIMD1-202ENST00000440097 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.91
LIMD1-202ENST00000440097 MUC5BQ9HC84 5762 aaPredicted RBP3.06□□□□□ -1.92
LIMD1-202ENST00000440097 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
LIMD1-202ENST00000440097 KRTAP5-8O75690 187 aa3□□□□□ -1.93
LIMD1-202ENST00000440097 KRTAP5-10Q6L8G5 202 aa2.99□□□□□ -1.93
LIMD1-202ENST00000440097 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
LIMD1-202ENST00000440097 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.93
LIMD1-202ENST00000440097 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
LIMD1-202ENST00000440097 KRTAP4-12Q9BQ66 201 aa2.91□□□□□ -1.94
LIMD1-202ENST00000440097 KRTAP5-7Q6L8G8 165 aa2.79□□□□□ -1.96
LIMD1-202ENST00000440097 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.73□□□□□ -1.97
LIMD1-202ENST00000440097 KRTAP21-2Q3LI59 83 aa2.71□□□□□ -1.98
LIMD1-202ENST00000440097 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
LIMD1-202ENST00000440097 KRTAP5-11Q6L8G4 156 aa2.57□□□□□ -2
LIMD1-202ENST00000440097 AHNAKQ09666 5890 aaKnown RBP2.51□□□□□ -2.01
LIMD1-202ENST00000440097 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
LIMD1-202ENST00000440097 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
LIMD1-202ENST00000440097 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms