RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 KRTAP19-7Q3SYF9 63 aa4.63□□□□□ -1.67
DDX56-204ENST00000431640 KRTAP6-3Q3LI67 103 aa4.61□□□□□ -1.67
DDX56-204ENST00000431640 KRTAP5-9P26371 169 aa4.59□□□□□ -1.67
DDX56-204ENST00000431640 MT1EP04732 61 aa4.54□□□□□ -1.68
DDX56-204ENST00000431640 MUC12Q9UKN1 5478 aa4.54□□□□□ -1.68
DDX56-204ENST00000431640 SPRR2FQ96RM1 72 aa4.53□□□□□ -1.68
DDX56-204ENST00000431640 MT1LQ93083 61 aa4.5□□□□□ -1.69
DDX56-204ENST00000431640 MDN1Q9NU22 5596 aa4.48□□□□□ -1.69
DDX56-204ENST00000431640 NEBP20929 6669 aa4.41□□□□□ -1.7
DDX56-204ENST00000431640 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.7
DDX56-204ENST00000431640 KRTAP4-7Q9BYR0 210 aa4.37□□□□□ -1.71
DDX56-204ENST00000431640 SPRR2EP22531 72 aa4.36□□□□□ -1.71
DDX56-204ENST00000431640 SPRR2BP35325 72 aa4.36□□□□□ -1.71
DDX56-204ENST00000431640 SPRR2AP35326 72 aa4.36□□□□□ -1.71
DDX56-204ENST00000431640 KRTAP9-6A8MVA2 160 aa4.36□□□□□ -1.71
DDX56-204ENST00000431640 MT1GP13640 62 aa4.34□□□□□ -1.71
DDX56-204ENST00000431640 KRTAP19-3Q7Z4W3 81 aa4.34□□□□□ -1.71
DDX56-204ENST00000431640 LCE5AQ5TCM9 118 aa4.31□□□□□ -1.72
DDX56-204ENST00000431640 INE1O15225 51 aa4.27□□□□□ -1.73
DDX56-204ENST00000431640 MT1MQ8N339 61 aa4.25□□□□□ -1.73
DDX56-204ENST00000431640 KRTAP2-3P0C7H8 128 aa4.22□□□□□ -1.73
DDX56-204ENST00000431640 KRTAP4-3Q9BYR4 195 aa4.22□□□□□ -1.73
DDX56-204ENST00000431640 KRTAP2-4Q9BYR9 128 aa4.22□□□□□ -1.73
DDX56-204ENST00000431640 KRTAP2-1Q9BYU5 128 aa4.22□□□□□ -1.73
DDX56-204ENST00000431640 SPRR2DP22532 72 aa4.2□□□□□ -1.74
DDX56-204ENST00000431640 KRTAP20-1Q3LI63 56 aa4.19□□□□□ -1.74
DDX56-204ENST00000431640 DSTQ03001 7570 aaKnown RBP4.11□□□□□ -1.75
DDX56-204ENST00000431640 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
DDX56-204ENST00000431640 LCE3BQ5TA77 95 aa4.06□□□□□ -1.76
DDX56-204ENST00000431640 KRTAP2-2Q9BYT5 123 aa4.02□□□□□ -1.77
DDX56-204ENST00000431640 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
DDX56-204ENST00000431640 MT1AP04731 61 aa3.83□□□□□ -1.8
DDX56-204ENST00000431640 KRTAP5-4Q6L8H1 288 aa3.8□□□□□ -1.8
DDX56-204ENST00000431640 KRTAP6-1Q3LI64 71 aa3.77□□□□□ -1.81
DDX56-204ENST00000431640 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
DDX56-204ENST00000431640 LCE4AQ5TA78 99 aa3.7□□□□□ -1.82
DDX56-204ENST00000431640 MT4P47944 62 aa3.68□□□□□ -1.82
DDX56-204ENST00000431640 LCE1DQ5T752 114 aa3.68□□□□□ -1.82
DDX56-204ENST00000431640 SYNE1Q8NF91 8797 aaKnown RBP3.66□□□□□ -1.82
DDX56-204ENST00000431640 KRTAP4-6Q9BYQ5 205 aa3.66□□□□□ -1.82
DDX56-204ENST00000431640 KRTAP12-4P60329 112 aa3.65□□□□□ -1.82
DDX56-204ENST00000431640 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
DDX56-204ENST00000431640 HMCN1Q96RW7 5635 aa3.63□□□□□ -1.83
DDX56-204ENST00000431640 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
DDX56-204ENST00000431640 KRTAP20-2Q3LI61 65 aa3.55□□□□□ -1.84
DDX56-204ENST00000431640 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
DDX56-204ENST00000431640 MT3P25713 68 aa3.49□□□□□ -1.85
DDX56-204ENST00000431640 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
DDX56-204ENST00000431640 KRTAP5-3Q6L8H2 238 aa3.45□□□□□ -1.86
DDX56-204ENST00000431640 KRTAP6-2Q3LI66 62 aa3.43□□□□□ -1.86
DDX56-204ENST00000431640 KRTAP5-2Q701N4 177 aa3.42□□□□□ -1.86
DDX56-204ENST00000431640 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
DDX56-204ENST00000431640 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
DDX56-204ENST00000431640 OBSCNQ5VST9 7968 aa3.17□□□□□ -1.9
DDX56-204ENST00000431640 PRM1P04553 51 aa3.17□□□□□ -1.9
DDX56-204ENST00000431640 KRTAP5-7Q6L8G8 165 aa3.15□□□□□ -1.91
DDX56-204ENST00000431640 KRTAP4-11Q9BYQ6 195 aa3.11□□□□□ -1.91
DDX56-204ENST00000431640 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
DDX56-204ENST00000431640 KRTAP5-1Q6L8H4 278 aa3□□□□□ -1.93
DDX56-204ENST00000431640 LCE1EQ5T753 118 aa2.95□□□□□ -1.94
DDX56-204ENST00000431640 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
DDX56-204ENST00000431640 KRTAP4-2Q9BYR5 136 aa2.83□□□□□ -1.96
DDX56-204ENST00000431640 KRTAP9-9Q9BYP9 154 aa2.78□□□□□ -1.96
DDX56-204ENST00000431640 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
DDX56-204ENST00000431640 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
DDX56-204ENST00000431640 AHNAKQ09666 5890 aaKnown RBP2.73□□□□□ -1.97
DDX56-204ENST00000431640 MUC5BQ9HC84 5762 aaPredicted RBP2.71□□□□□ -1.97
DDX56-204ENST00000431640 KRTAP4-12Q9BQ66 201 aa2.7□□□□□ -1.98
DDX56-204ENST00000431640 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -1.99
DDX56-204ENST00000431640 KRTAP21-2Q3LI59 83 aa2.47□□□□□ -2.01
DDX56-204ENST00000431640 KRTAP5-11Q6L8G4 156 aa2.47□□□□□ -2.01
DDX56-204ENST00000431640 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
DDX56-204ENST00000431640 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
DDX56-204ENST00000431640 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
DDX56-204ENST00000431640 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
DDX56-204ENST00000431640 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
DDX56-204ENST00000431640 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 175 ms