RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KRTAP12-3P60328 96 aa5.71□□□□□ -1.5
USP4-203ENST00000415188 SPRR2EP22531 72 aa5.65□□□□□ -1.5
USP4-203ENST00000415188 SPRR2BP35325 72 aa5.65□□□□□ -1.5
USP4-203ENST00000415188 SPRR2AP35326 72 aa5.65□□□□□ -1.5
USP4-203ENST00000415188 KRTAP2-3P0C7H8 128 aa5.63□□□□□ -1.51
USP4-203ENST00000415188 KRTAP2-4Q9BYR9 128 aa5.63□□□□□ -1.51
USP4-203ENST00000415188 KRTAP4-8A0A0G2JLE6 195 aa5.58□□□□□ -1.52
USP4-203ENST00000415188 KRTAP4-8Q9BYQ9 185 aa5.58□□□□□ -1.52
USP4-203ENST00000415188 LCE1AQ5T7P2 110 aa5.56□□□□□ -1.52
USP4-203ENST00000415188 A0A0A0MQY5 61 aa5.55□□□□□ -1.52
USP4-203ENST00000415188 KRTAP19-5Q3LI72 72 aa5.48□□□□□ -1.53
USP4-203ENST00000415188 SPRR2DP22532 72 aa5.46□□□□□ -1.53
USP4-203ENST00000415188 KRTAP2-2Q9BYT5 123 aa5.45□□□□□ -1.54
USP4-203ENST00000415188 KRTAP2-1Q9BYU5 128 aa5.45□□□□□ -1.54
USP4-203ENST00000415188 KRTAP19-4Q3LI73 84 aa5.39□□□□□ -1.55
USP4-203ENST00000415188 LCE3CQ5T5A8 94 aa5.37□□□□□ -1.55
USP4-203ENST00000415188 LCE3BQ5TA77 95 aa5.32□□□□□ -1.56
USP4-203ENST00000415188 KRTAP19-7Q3SYF9 63 aa5.3□□□□□ -1.56
USP4-203ENST00000415188 MT1EP04732 61 aa5.19□□□□□ -1.58
USP4-203ENST00000415188 MT1LQ93083 61 aa5.16□□□□□ -1.58
USP4-203ENST00000415188 INE1O15225 51 aa5.13□□□□□ -1.59
USP4-203ENST00000415188 LCE5AQ5TCM9 118 aa5.12□□□□□ -1.59
USP4-203ENST00000415188 DSTQ03001 7570 aaKnown RBP5.09□□□□□ -1.59
USP4-203ENST00000415188 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
USP4-203ENST00000415188 GPR98Q8WXG9 6306 aa5.05□□□□□ -1.6
USP4-203ENST00000415188 KRTAP9-6A8MVA2 160 aa5.05□□□□□ -1.6
USP4-203ENST00000415188 KRTAP4-9Q9BYQ8 210 aa5.01□□□□□ -1.61
USP4-203ENST00000415188 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
USP4-203ENST00000415188 MT1GP13640 62 aa4.93□□□□□ -1.62
USP4-203ENST00000415188 MT1MQ8N339 61 aa4.88□□□□□ -1.63
USP4-203ENST00000415188 LCE1DQ5T752 114 aa4.87□□□□□ -1.63
USP4-203ENST00000415188 HMCN1Q96RW7 5635 aa4.83□□□□□ -1.64
USP4-203ENST00000415188 MT4P47944 62 aa4.81□□□□□ -1.64
USP4-203ENST00000415188 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
USP4-203ENST00000415188 LCE4AQ5TA78 99 aa4.8□□□□□ -1.64
USP4-203ENST00000415188 AHNAK2Q8IVF2 5795 aa4.73□□□□□ -1.65
USP4-203ENST00000415188 KRTAP5-4Q6L8H1 288 aa4.7□□□□□ -1.66
USP4-203ENST00000415188 LOC100996750A0A140TA64 210 aa4.67□□□□□ -1.66
USP4-203ENST00000415188 KRTAP4-6Q9BYQ5 205 aa4.67□□□□□ -1.66
USP4-203ENST00000415188 KRTAP5-10Q6L8G5 202 aa4.56□□□□□ -1.68
USP4-203ENST00000415188 KRTAP5-5Q701N2 237 aaPredicted RBP4.49□□□□□ -1.69
USP4-203ENST00000415188 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
USP4-203ENST00000415188 KRTAP5-3Q6L8H2 238 aa4.44□□□□□ -1.7
USP4-203ENST00000415188 MT1AP04731 61 aa4.4□□□□□ -1.71
USP4-203ENST00000415188 KRTAP5-7Q6L8G8 165 aa4.39□□□□□ -1.71
USP4-203ENST00000415188 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
USP4-203ENST00000415188 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
USP4-203ENST00000415188 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
USP4-203ENST00000415188 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
USP4-203ENST00000415188 KRTAP5-2Q701N4 177 aa4.11□□□□□ -1.75
USP4-203ENST00000415188 LCE3DQ9BYE3 92 aa4.11□□□□□ -1.75
USP4-203ENST00000415188 KRTAP4-11Q9BYQ6 195 aa4.09□□□□□ -1.75
USP4-203ENST00000415188 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
USP4-203ENST00000415188 KRTAP6-2Q3LI66 62 aa3.98□□□□□ -1.77
USP4-203ENST00000415188 KRTAP5-8O75690 187 aa3.96□□□□□ -1.78
USP4-203ENST00000415188 MT3P25713 68 aa3.96□□□□□ -1.78
USP4-203ENST00000415188 AHNAKQ09666 5890 aaKnown RBP3.93□□□□□ -1.78
USP4-203ENST00000415188 MUC5BQ9HC84 5762 aaPredicted RBP3.89□□□□□ -1.79
USP4-203ENST00000415188 OBSCNQ5VST9 7968 aa3.88□□□□□ -1.79
USP4-203ENST00000415188 MUC5ACP98088 5654 aa3.87□□□□□ -1.79
USP4-203ENST00000415188 KRTAP9-9Q9BYP9 154 aa3.76□□□□□ -1.81
USP4-203ENST00000415188 PRM1P04553 51 aa3.73□□□□□ -1.81
USP4-203ENST00000415188 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
USP4-203ENST00000415188 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
USP4-203ENST00000415188 KRTAP4-2Q9BYR5 136 aa3.35□□□□□ -1.87
USP4-203ENST00000415188 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
USP4-203ENST00000415188 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
USP4-203ENST00000415188 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.92
USP4-203ENST00000415188 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.96□□□□□ -1.93
USP4-203ENST00000415188 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
USP4-203ENST00000415188 LCE1FQ5T754 118 aa2.86□□□□□ -1.95
USP4-203ENST00000415188 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
USP4-203ENST00000415188 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
USP4-203ENST00000415188 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
USP4-203ENST00000415188 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
USP4-203ENST00000415188 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
USP4-203ENST00000415188 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 5.2 ms