RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 MUC12Q9UKN1 5478 aa4.09□□□□□ -1.75
SNX13-202ENST00000409604 KRTAP9-6A0A140TA67 174 aa4.08□□□□□ -1.76
SNX13-202ENST00000409604 KRTAP19-6Q3LI70 58 aa4.07□□□□□ -1.76
SNX13-202ENST00000409604 LCE3CQ5T5A8 94 aa4.04□□□□□ -1.76
SNX13-202ENST00000409604 MT1GP13640 62 aa4.03□□□□□ -1.76
SNX13-202ENST00000409604 LCE2DQ5TA82 110 aaPredicted RBP4.03□□□□□ -1.76
SNX13-202ENST00000409604 SPRR2DP22532 72 aa3.99□□□□□ -1.77
SNX13-202ENST00000409604 KRTAP4-3Q9BYR4 195 aa3.98□□□□□ -1.77
SNX13-202ENST00000409604 MT1EP04732 61 aa3.92□□□□□ -1.78
SNX13-202ENST00000409604 KRTAP19-3Q7Z4W3 81 aa3.88□□□□□ -1.79
SNX13-202ENST00000409604 MT1LQ93083 61 aa3.88□□□□□ -1.79
SNX13-202ENST00000409604 LOC100996750A0A140TA64 210 aa3.86□□□□□ -1.79
SNX13-202ENST00000409604 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
SNX13-202ENST00000409604 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.8
SNX13-202ENST00000409604 LCE3BQ5TA77 95 aa3.84□□□□□ -1.8
SNX13-202ENST00000409604 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.82□□□□□ -1.8
SNX13-202ENST00000409604 MT1MQ8N339 61 aa3.77□□□□□ -1.81
SNX13-202ENST00000409604 MDN1Q9NU22 5596 aa3.73□□□□□ -1.81
SNX13-202ENST00000409604 MT4P47944 62 aa3.72□□□□□ -1.81
SNX13-202ENST00000409604 KRTAP12-4P60329 112 aa3.62□□□□□ -1.83
SNX13-202ENST00000409604 LCE1AQ5T7P2 110 aa3.62□□□□□ -1.83
SNX13-202ENST00000409604 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.84
SNX13-202ENST00000409604 KRTAP4-9Q9BYQ8 210 aa3.56□□□□□ -1.84
SNX13-202ENST00000409604 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
SNX13-202ENST00000409604 SPRR5A0A1B0GTR4 108 aa3.52□□□□□ -1.85
SNX13-202ENST00000409604 KRTAP19-4Q3LI73 84 aa3.51□□□□□ -1.85
SNX13-202ENST00000409604 LCE5AQ5TCM9 118 aa3.51□□□□□ -1.85
SNX13-202ENST00000409604 NEBP20929 6669 aa3.48□□□□□ -1.85
SNX13-202ENST00000409604 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
SNX13-202ENST00000409604 INE1O15225 51 aa3.47□□□□□ -1.85
SNX13-202ENST00000409604 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
SNX13-202ENST00000409604 KRTAP2-3P0C7H8 128 aa3.35□□□□□ -1.87
SNX13-202ENST00000409604 KRTAP2-4Q9BYR9 128 aa3.35□□□□□ -1.87
SNX13-202ENST00000409604 LCE3DQ9BYE3 92 aa3.35□□□□□ -1.87
SNX13-202ENST00000409604 KRTAP5-9P26371 169 aa3.32□□□□□ -1.88
SNX13-202ENST00000409604 KRTAP2-2Q9BYT5 123 aa3.29□□□□□ -1.88
SNX13-202ENST00000409604 KRTAP2-1Q9BYU5 128 aa3.29□□□□□ -1.88
SNX13-202ENST00000409604 MT1AP04731 61 aa3.29□□□□□ -1.88
SNX13-202ENST00000409604 MT3P25713 68 aa3.27□□□□□ -1.89
SNX13-202ENST00000409604 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
SNX13-202ENST00000409604 KRTAP6-2Q3LI66 62 aa3.25□□□□□ -1.89
SNX13-202ENST00000409604 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
SNX13-202ENST00000409604 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
SNX13-202ENST00000409604 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
SNX13-202ENST00000409604 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
SNX13-202ENST00000409604 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
SNX13-202ENST00000409604 KRTAP9-4Q9BYQ2 154 aa3.09□□□□□ -1.91
SNX13-202ENST00000409604 LCE4AQ5TA78 99 aa3.07□□□□□ -1.92
SNX13-202ENST00000409604 PRM1P04553 51 aa2.96□□□□□ -1.94
SNX13-202ENST00000409604 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
SNX13-202ENST00000409604 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
SNX13-202ENST00000409604 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
SNX13-202ENST00000409604 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
SNX13-202ENST00000409604 KRTAP4-11Q9BYQ6 195 aa2.64□□□□□ -1.99
SNX13-202ENST00000409604 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
SNX13-202ENST00000409604 KRTAP5-4Q6L8H1 288 aa2.63□□□□□ -1.99
SNX13-202ENST00000409604 KRTAP9-9Q9BYP9 154 aa2.6□□□□□ -1.99
SNX13-202ENST00000409604 KRTAP5-3Q6L8H2 238 aa2.59□□□□□ -1.99
SNX13-202ENST00000409604 LCE1CQ5T751 118 aa2.59□□□□□ -2
SNX13-202ENST00000409604 LCE1EQ5T753 118 aa2.59□□□□□ -2
SNX13-202ENST00000409604 LCE1FQ5T754 118 aa2.59□□□□□ -2
SNX13-202ENST00000409604 KRTAP4-12Q9BQ66 201 aa2.58□□□□□ -2
SNX13-202ENST00000409604 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
SNX13-202ENST00000409604 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
SNX13-202ENST00000409604 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
SNX13-202ENST00000409604 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
SNX13-202ENST00000409604 KRTAP5-2Q701N4 177 aa2.31□□□□□ -2.04
SNX13-202ENST00000409604 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
SNX13-202ENST00000409604 KRTAP5-1Q6L8H4 278 aa2.15□□□□□ -2.06
SNX13-202ENST00000409604 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
SNX13-202ENST00000409604 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.93□□□□□ -2.1
SNX13-202ENST00000409604 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
SNX13-202ENST00000409604 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
SNX13-202ENST00000409604 KRTAP5-11Q6L8G4 156 aa1.84□□□□□ -2.12
SNX13-202ENST00000409604 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
SNX13-202ENST00000409604 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
SNX13-202ENST00000409604 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 10.8 ms