RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 C10orf95Q9H7T3 257 aa2.77□□□□□ -1.97
CLK1-202ENST00000409403 A0A0D9SG42 100 aa2.76□□□□□ -1.97
CLK1-202ENST00000409403 MACF1Q9UPN3 7388 aaKnown RBP2.75□□□□□ -1.97
CLK1-202ENST00000409403 KRTAP13-4Q3LI77 160 aa2.72□□□□□ -1.97
CLK1-202ENST00000409403 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
CLK1-202ENST00000409403 PLAC4Q8WY50 150 aa2.71□□□□□ -1.98
CLK1-202ENST00000409403 M0QZ58 72 aa2.69□□□□□ -1.98
CLK1-202ENST00000409403 KRTAP12-1P59990 96 aa2.68□□□□□ -1.98
CLK1-202ENST00000409403 KRTAP6-3Q3LI67 103 aa2.68□□□□□ -1.98
CLK1-202ENST00000409403 C9orf92A6NGG3 77 aa2.66□□□□□ -1.98
CLK1-202ENST00000409403 PP632Q6XCG6 107 aa2.66□□□□□ -1.98
CLK1-202ENST00000409403 KRTAP10-8P60410 259 aa2.6□□□□□ -1.99
CLK1-202ENST00000409403 MUC12Q9UKN1 5478 aa2.6□□□□□ -1.99
CLK1-202ENST00000409403 MUC17Q685J3 4493 aa2.6□□□□□ -1.99
CLK1-202ENST00000409403 PRO2289Q9P1D8 64 aa2.57□□□□□ -2
CLK1-202ENST00000409403 KMT2DO14686 5537 aa2.56□□□□□ -2
CLK1-202ENST00000409403 KRTAP5-8O75690 187 aa2.55□□□□□ -2
CLK1-202ENST00000409403 MT1HP80294 61 aa2.55□□□□□ -2
CLK1-202ENST00000409403 INE1O15225 51 aa2.53□□□□□ -2
CLK1-202ENST00000409403 KRTAP2-3P0C7H8 128 aa2.53□□□□□ -2
CLK1-202ENST00000409403 KRTAP2-4Q9BYR9 128 aa2.53□□□□□ -2
CLK1-202ENST00000409403 KRTAP4-1Q9BYQ7 146 aa2.52□□□□□ -2.01
CLK1-202ENST00000409403 R4GN34 69 aa2.51□□□□□ -2.01
CLK1-202ENST00000409403 SPRR5A0A1B0GTR4 108 aa2.49□□□□□ -2.01
CLK1-202ENST00000409403 KRTAP19-2Q3LHN2 52 aa2.47□□□□□ -2.01
CLK1-202ENST00000409403 LCE3AQ5TA76 89 aa2.45□□□□□ -2.02
CLK1-202ENST00000409403 MDN1Q9NU22 5596 aa2.43□□□□□ -2.02
CLK1-202ENST00000409403 M0R2T5 61 aa2.42□□□□□ -2.02
CLK1-202ENST00000409403 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
CLK1-202ENST00000409403 TNP1P09430 55 aa2.41□□□□□ -2.02
CLK1-202ENST00000409403 KRTAP2-1Q9BYU5 128 aa2.41□□□□□ -2.02
CLK1-202ENST00000409403 KRTAP19-6Q3LI70 58 aa2.38□□□□□ -2.03
CLK1-202ENST00000409403 FLGP20930 4061 aaPredicted RBP2.38□□□□□ -2.03
CLK1-202ENST00000409403 KRTAP10-10P60014 251 aa2.34□□□□□ -2.04
CLK1-202ENST00000409403 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
CLK1-202ENST00000409403 KRTAP5-5Q701N2 237 aaPredicted RBP2.25□□□□□ -2.05
CLK1-202ENST00000409403 SPRR2EP22531 72 aa2.24□□□□□ -2.05
CLK1-202ENST00000409403 SPRR2BP35325 72 aa2.24□□□□□ -2.05
CLK1-202ENST00000409403 SPRR2AP35326 72 aa2.24□□□□□ -2.05
CLK1-202ENST00000409403 KRTAP5-10Q6L8G5 202 aa2.24□□□□□ -2.05
CLK1-202ENST00000409403 MT2AP02795 61 aa2.22□□□□□ -2.05
CLK1-202ENST00000409403 MT1FP04733 61 aa2.22□□□□□ -2.05
CLK1-202ENST00000409403 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
CLK1-202ENST00000409403 SPRR2DP22532 72 aa2.17□□□□□ -2.06
CLK1-202ENST00000409403 HMCN1Q96RW7 5635 aa2.16□□□□□ -2.06
CLK1-202ENST00000409403 DSTQ03001 7570 aaKnown RBP2.15□□□□□ -2.07
CLK1-202ENST00000409403 KRTAP8-1Q8IUC2 63 aa2.15□□□□□ -2.07
CLK1-202ENST00000409403 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
CLK1-202ENST00000409403 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
CLK1-202ENST00000409403 SPRR2FQ96RM1 72 aa2.12□□□□□ -2.07
CLK1-202ENST00000409403 AHNAKQ09666 5890 aaKnown RBP2.08□□□□□ -2.08
CLK1-202ENST00000409403 SPRR2GQ9BYE4 73 aa2.07□□□□□ -2.08
CLK1-202ENST00000409403 KRTAP12-3P60328 96 aa2.06□□□□□ -2.08
CLK1-202ENST00000409403 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
CLK1-202ENST00000409403 MT4P47944 62 aa1.98□□□□□ -2.09
CLK1-202ENST00000409403 MUC5ACP98088 5654 aa1.96□□□□□ -2.1
CLK1-202ENST00000409403 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
CLK1-202ENST00000409403 MT1XP80297 61 aa1.9□□□□□ -2.11
CLK1-202ENST00000409403 MT1BP07438 61 aa1.86□□□□□ -2.11
CLK1-202ENST00000409403 KRTAP19-5Q3LI72 72 aa1.83□□□□□ -2.12
CLK1-202ENST00000409403 KRTAP12-4P60329 112 aa1.82□□□□□ -2.12
CLK1-202ENST00000409403 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
CLK1-202ENST00000409403 MT1EP04732 61 aa1.69□□□□□ -2.14
CLK1-202ENST00000409403 MT1LQ93083 61 aa1.68□□□□□ -2.14
CLK1-202ENST00000409403 KRTAP20-2Q3LI61 65 aa1.67□□□□□ -2.14
CLK1-202ENST00000409403 KRTAP19-7Q3SYF9 63 aa1.67□□□□□ -2.14
CLK1-202ENST00000409403 MT1AP04731 61 aa1.63□□□□□ -2.15
CLK1-202ENST00000409403 PRM1P04553 51 aa1.58□□□□□ -2.16
CLK1-202ENST00000409403 MT1GP13640 62 aa1.54□□□□□ -2.16
CLK1-202ENST00000409403 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
CLK1-202ENST00000409403 KRTAP19-3Q7Z4W3 81 aa1.54□□□□□ -2.16
CLK1-202ENST00000409403 MT1MQ8N339 61 aa1.51□□□□□ -2.17
CLK1-202ENST00000409403 SYNE1Q8NF91 8797 aaKnown RBP1.5□□□□□ -2.17
CLK1-202ENST00000409403 KRTAP6-2Q3LI66 62 aa1.45□□□□□ -2.18
CLK1-202ENST00000409403 KRTAP6-1Q3LI64 71 aa1.39□□□□□ -2.19
CLK1-202ENST00000409403 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
CLK1-202ENST00000409403 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
CLK1-202ENST00000409403 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 444.2 ms