RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 SYNE2Q8WXH0 6885 aaKnown RBP2.95□□□□□ -1.94
SNX13-201ENST00000409076 SSPOA2VEC9 5147 aa2.92□□□□□ -1.94
SNX13-201ENST00000409076 MT1GP13640 62 aa2.9□□□□□ -1.95
SNX13-201ENST00000409076 KRTAP19-7Q3SYF9 63 aa2.83□□□□□ -1.96
SNX13-201ENST00000409076 LCE3BQ5TA77 95 aa2.8□□□□□ -1.96
SNX13-201ENST00000409076 MT1LQ93083 61 aa2.79□□□□□ -1.96
SNX13-201ENST00000409076 KRTAP4-6Q9BYQ5 205 aa2.79□□□□□ -1.96
SNX13-201ENST00000409076 LCE2AQ5TA79 106 aaPredicted RBP2.79□□□□□ -1.96
SNX13-201ENST00000409076 KRTAP4-9Q9BYQ8 210 aa2.78□□□□□ -1.96
SNX13-201ENST00000409076 SPRR2FQ96RM1 72 aa2.78□□□□□ -1.96
SNX13-201ENST00000409076 MT1EP04732 61 aa2.76□□□□□ -1.97
SNX13-201ENST00000409076 KRTAP12-4P60329 112 aa2.73□□□□□ -1.97
SNX13-201ENST00000409076 MACF1Q9UPN3 7388 aaKnown RBP2.71□□□□□ -1.98
SNX13-201ENST00000409076 KRTAP2-3P0C7H8 128 aa2.68□□□□□ -1.98
SNX13-201ENST00000409076 KRTAP2-4Q9BYR9 128 aa2.68□□□□□ -1.98
SNX13-201ENST00000409076 KRTAP2-1Q9BYU5 128 aa2.68□□□□□ -1.98
SNX13-201ENST00000409076 MDN1Q9NU22 5596 aa2.68□□□□□ -1.98
SNX13-201ENST00000409076 MT1MQ8N339 61 aa2.62□□□□□ -1.99
SNX13-201ENST00000409076 KRTAP19-3Q7Z4W3 81 aa2.59□□□□□ -1.99
SNX13-201ENST00000409076 KRTAP19-6Q3LI70 58 aa2.5□□□□□ -2.01
SNX13-201ENST00000409076 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.49□□□□□ -2.01
SNX13-201ENST00000409076 KRTAP9-7A8MTY7 169 aa2.48□□□□□ -2.01
SNX13-201ENST00000409076 KRTAP6-1Q3LI64 71 aa2.48□□□□□ -2.01
SNX13-201ENST00000409076 KRTAP9-2Q9BYQ4 174 aa2.47□□□□□ -2.01
SNX13-201ENST00000409076 KRTAP9-6A0A140TA67 174 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 PRM1P04553 51 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 SPRR2EP22531 72 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 SPRR2BP35325 72 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 SPRR2AP35326 72 aa2.45□□□□□ -2.02
SNX13-201ENST00000409076 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
SNX13-201ENST00000409076 LCE5AQ5TCM9 118 aa2.38□□□□□ -2.03
SNX13-201ENST00000409076 KRTAP4-12Q9BQ66 201 aa2.36□□□□□ -2.03
SNX13-201ENST00000409076 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
SNX13-201ENST00000409076 KRTAP9-4Q9BYQ2 154 aa2.35□□□□□ -2.03
SNX13-201ENST00000409076 KRTAP19-4Q3LI73 84 aa2.33□□□□□ -2.04
SNX13-201ENST00000409076 SPRR2DP22532 72 aa2.31□□□□□ -2.04
SNX13-201ENST00000409076 KRTAP6-2Q3LI66 62 aa2.28□□□□□ -2.04
SNX13-201ENST00000409076 LCE1AQ5T7P2 110 aa2.28□□□□□ -2.04
SNX13-201ENST00000409076 MT1AP04731 61 aa2.27□□□□□ -2.05
SNX13-201ENST00000409076 MT4P47944 62 aa2.26□□□□□ -2.05
SNX13-201ENST00000409076 KRTAP5-5Q701N2 237 aaPredicted RBP2.22□□□□□ -2.05
SNX13-201ENST00000409076 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
SNX13-201ENST00000409076 LCE1DQ5T752 114 aa2.2□□□□□ -2.06
SNX13-201ENST00000409076 KRTAP4-2Q9BYR5 136 aa2.18□□□□□ -2.06
SNX13-201ENST00000409076 MT3P25713 68 aa2.12□□□□□ -2.07
SNX13-201ENST00000409076 LCE1BQ5T7P3 118 aa2.1□□□□□ -2.07
SNX13-201ENST00000409076 KRTAP6-3Q3LI67 103 aa2.09□□□□□ -2.07
SNX13-201ENST00000409076 KRTAP4-11Q9BYQ6 195 aa2.07□□□□□ -2.08
SNX13-201ENST00000409076 KRTAP5-3Q6L8H2 238 aa2.02□□□□□ -2.09
SNX13-201ENST00000409076 LCE4AQ5TA78 99 aa2.02□□□□□ -2.09
SNX13-201ENST00000409076 KRTAP2-2Q9BYT5 123 aa2.02□□□□□ -2.09
SNX13-201ENST00000409076 NEBP20929 6669 aa2.01□□□□□ -2.09
SNX13-201ENST00000409076 MUC5ACP98088 5654 aa2.01□□□□□ -2.09
SNX13-201ENST00000409076 KRTAP5-9P26371 169 aa1.99□□□□□ -2.09
SNX13-201ENST00000409076 LCE1EQ5T753 118 aa1.97□□□□□ -2.09
SNX13-201ENST00000409076 HMCN1Q96RW7 5635 aa1.94□□□□□ -2.1
SNX13-201ENST00000409076 KRTAP20-2Q3LI61 65 aa1.83□□□□□ -2.12
SNX13-201ENST00000409076 KRTAP4-4Q9BYR3 166 aa1.82□□□□□ -2.12
SNX13-201ENST00000409076 KRTAP5-4Q6L8H1 288 aa1.71□□□□□ -2.14
SNX13-201ENST00000409076 MUC5BQ9HC84 5762 aaPredicted RBP1.7□□□□□ -2.14
SNX13-201ENST00000409076 KRTAP20-1Q3LI63 56 aa1.63□□□□□ -2.15
SNX13-201ENST00000409076 AHNAK2Q8IVF2 5795 aa1.61□□□□□ -2.15
SNX13-201ENST00000409076 KRTAP5-10Q6L8G5 202 aa1.61□□□□□ -2.15
SNX13-201ENST00000409076 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.56□□□□□ -2.16
SNX13-201ENST00000409076 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
SNX13-201ENST00000409076 LCE1CQ5T751 118 aa1.51□□□□□ -2.17
SNX13-201ENST00000409076 LCE1FQ5T754 118 aa1.51□□□□□ -2.17
SNX13-201ENST00000409076 GPR98Q8WXG9 6306 aa1.47□□□□□ -2.17
SNX13-201ENST00000409076 KRTAP5-1Q6L8H4 278 aa1.44□□□□□ -2.18
SNX13-201ENST00000409076 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
SNX13-201ENST00000409076 KRTAP5-11Q6L8G4 156 aa1.42□□□□□ -2.18
SNX13-201ENST00000409076 KRTAP5-8O75690 187 aa1.41□□□□□ -2.18
SNX13-201ENST00000409076 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
SNX13-201ENST00000409076 AHNAKQ09666 5890 aaKnown RBP1.26□□□□□ -2.21
SNX13-201ENST00000409076 KRTAP5-7Q6L8G8 165 aa1.19□□□□□ -2.22
SNX13-201ENST00000409076 PHGR1C9JFL3 82 aa1.06□□□□□ -2.24
SNX13-201ENST00000409076 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms