RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CLPSL2Q6UWE3 100 aa1.37□□□□□ -2.19
HMGB1-204ENST00000399489 APELAP0DMC3 54 aa1.36□□□□□ -2.19
HMGB1-204ENST00000399489 NOP10Q9NPE3 64 aaKnown RBP1.36□□□□□ -2.19
HMGB1-204ENST00000399489 AHNAKQ09666 5890 aaKnown RBP1.35□□□□□ -2.19
HMGB1-204ENST00000399489 HTN3P15516 51 aa1.35□□□□□ -2.19
HMGB1-204ENST00000399489 DEFB104AQ8WTQ1 72 aa1.35□□□□□ -2.19
HMGB1-204ENST00000399489 SPINK1P00995 79 aa1.34□□□□□ -2.2
HMGB1-204ENST00000399489 MT1HL1P0DM35 61 aa1.34□□□□□ -2.2
HMGB1-204ENST00000399489 RPL39P5Q59GN2 51 aa1.32□□□□□ -2.2
HMGB1-204ENST00000399489 FCGBPQ9Y6R7 5405 aaPredicted RBP1.32□□□□□ -2.2
HMGB1-204ENST00000399489 K7EIM0 57 aa1.3□□□□□ -2.2
HMGB1-204ENST00000399489 SPART-AS1P0CW21 52 aa1.3□□□□□ -2.2
HMGB1-204ENST00000399489 TMEM167AQ8TBQ9 72 aa1.3□□□□□ -2.2
HMGB1-204ENST00000399489 RHPN1-AS1Q9BWJ2 59 aa1.29□□□□□ -2.2
HMGB1-204ENST00000399489 SYNE2Q8WXH0 6885 aaKnown RBP1.29□□□□□ -2.2
HMGB1-204ENST00000399489 AHNAK2Q8IVF2 5795 aa1.29□□□□□ -2.2
HMGB1-204ENST00000399489 MUC17Q685J3 4493 aa1.28□□□□□ -2.2
HMGB1-204ENST00000399489 USH2AO75445 5202 aa1.27□□□□□ -2.21
HMGB1-204ENST00000399489 DEFB1P60022 68 aa1.27□□□□□ -2.21
HMGB1-204ENST00000399489 SSPOA2VEC9 5147 aa1.27□□□□□ -2.21
HMGB1-204ENST00000399489 H3BNG1 76 aa1.26□□□□□ -2.21
HMGB1-204ENST00000399489 MACF1Q9UPN3 7388 aaKnown RBP1.26□□□□□ -2.21
HMGB1-204ENST00000399489 A0A096LPF7 62 aa1.25□□□□□ -2.21
HMGB1-204ENST00000399489 HTN1P15515 57 aa1.25□□□□□ -2.21
HMGB1-204ENST00000399489 NEBP20929 6669 aa1.21□□□□□ -2.22
HMGB1-204ENST00000399489 LINC01556Q5JQF7 62 aa1.21□□□□□ -2.22
HMGB1-204ENST00000399489 M0QZ58 72 aa1.2□□□□□ -2.22
HMGB1-204ENST00000399489 MUC12Q9UKN1 5478 aa1.19□□□□□ -2.22
HMGB1-204ENST00000399489 SPINK6Q6UWN8 80 aa1.18□□□□□ -2.22
HMGB1-204ENST00000399489 GPR98Q8WXG9 6306 aa1.17□□□□□ -2.22
HMGB1-204ENST00000399489 KRTAP19-2Q3LHN2 52 aa1.16□□□□□ -2.22
HMGB1-204ENST00000399489 MT1HP80294 61 aa1.15□□□□□ -2.22
HMGB1-204ENST00000399489 FLGP20930 4061 aaPredicted RBP1.15□□□□□ -2.23
HMGB1-204ENST00000399489 KMT2DO14686 5537 aa1.14□□□□□ -2.23
HMGB1-204ENST00000399489 M0R2T5 61 aa1.13□□□□□ -2.23
HMGB1-204ENST00000399489 A0A096LNI7 61 aa1.12□□□□□ -2.23
HMGB1-204ENST00000399489 MDN1Q9NU22 5596 aa1.1□□□□□ -2.23
HMGB1-204ENST00000399489 TNP1P09430 55 aa1.09□□□□□ -2.24
HMGB1-204ENST00000399489 KRTAP20-1Q3LI63 56 aa1.09□□□□□ -2.24
HMGB1-204ENST00000399489 KRTAP19-6Q3LI70 58 aa1.06□□□□□ -2.24
HMGB1-204ENST00000399489 C9orf92A6NGG3 77 aa1.06□□□□□ -2.24
HMGB1-204ENST00000399489 KRTAP2-3P0C7H8 128 aa1.04□□□□□ -2.24
HMGB1-204ENST00000399489 KRTAP2-4Q9BYR9 128 aa1.04□□□□□ -2.24
HMGB1-204ENST00000399489 KRTAP2-1Q9BYU5 128 aa1.04□□□□□ -2.24
HMGB1-204ENST00000399489 MT2AP02795 61 aa1.03□□□□□ -2.24
HMGB1-204ENST00000399489 MT1FP04733 61 aa1.02□□□□□ -2.25
HMGB1-204ENST00000399489 RPS29P62273 56 aaKnown RBP1□□□□□ -2.25
HMGB1-204ENST00000399489 KRTAP19-3Q7Z4W3 81 aa1□□□□□ -2.25
HMGB1-204ENST00000399489 DSTQ03001 7570 aaKnown RBP1□□□□□ -2.25
HMGB1-204ENST00000399489 MUC5ACP98088 5654 aa0.97□□□□□ -2.25
HMGB1-204ENST00000399489 PRM1P04553 51 aa0.96□□□□□ -2.26
HMGB1-204ENST00000399489 SPRR2EP22531 72 aa0.92□□□□□ -2.26
HMGB1-204ENST00000399489 SPRR2BP35325 72 aa0.92□□□□□ -2.26
HMGB1-204ENST00000399489 SPRR2AP35326 72 aa0.92□□□□□ -2.26
HMGB1-204ENST00000399489 MT1BP07438 61 aa0.91□□□□□ -2.26
HMGB1-204ENST00000399489 SPRR2FQ96RM1 72 aa0.9□□□□□ -2.27
HMGB1-204ENST00000399489 SPRR2DP22532 72 aa0.89□□□□□ -2.27
HMGB1-204ENST00000399489 KRTAP5-10Q6L8G5 202 aa0.89□□□□□ -2.27
HMGB1-204ENST00000399489 KRTAP19-8Q3LI54 63 aa0.87□□□□□ -2.27
HMGB1-204ENST00000399489 KRTAP8-1Q8IUC2 63 aa0.87□□□□□ -2.27
HMGB1-204ENST00000399489 SPRR2GQ9BYE4 73 aa0.85□□□□□ -2.27
HMGB1-204ENST00000399489 SYNE1Q8NF91 8797 aaKnown RBP0.83□□□□□ -2.28
HMGB1-204ENST00000399489 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
HMGB1-204ENST00000399489 MT4P47944 62 aa0.81□□□□□ -2.28
HMGB1-204ENST00000399489 MT1XP80297 61 aa0.81□□□□□ -2.28
HMGB1-204ENST00000399489 MT1AP04731 61 aa0.75□□□□□ -2.29
HMGB1-204ENST00000399489 KRTAP21-1Q3LI58 79 aa0.74□□□□□ -2.29
HMGB1-204ENST00000399489 KRTAP20-2Q3LI61 65 aa0.73□□□□□ -2.29
HMGB1-204ENST00000399489 KRTAP19-7Q3SYF9 63 aa0.72□□□□□ -2.29
HMGB1-204ENST00000399489 MT1EP04732 61 aa0.72□□□□□ -2.29
HMGB1-204ENST00000399489 KRTAP6-2Q3LI66 62 aa0.72□□□□□ -2.29
HMGB1-204ENST00000399489 KRTAP19-5Q3LI72 72 aa0.72□□□□□ -2.29
HMGB1-204ENST00000399489 MT1GP13640 62 aa0.7□□□□□ -2.3
HMGB1-204ENST00000399489 MT1MQ8N339 61 aa0.69□□□□□ -2.3
HMGB1-204ENST00000399489 MT1LQ93083 61 aa0.66□□□□□ -2.3
HMGB1-204ENST00000399489 KRTAP6-1Q3LI64 71 aa0.56□□□□□ -2.32
HMGB1-204ENST00000399489 PHGR1C9JFL3 82 aa0.5□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms