RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 LCE3EQ5T5B0 92 aa1.72□□□□□ -2.13
SMAD4-202ENST00000398417 LCE2AQ5TA79 106 aaPredicted RBP1.71□□□□□ -2.14
SMAD4-202ENST00000398417 FSIP2Q5CZC0 6907 aa1.7□□□□□ -2.14
SMAD4-202ENST00000398417 MT1GP13640 62 aa1.69□□□□□ -2.14
SMAD4-202ENST00000398417 KRTAP19-7Q3SYF9 63 aa1.68□□□□□ -2.14
SMAD4-202ENST00000398417 MT1LQ93083 61 aa1.68□□□□□ -2.14
SMAD4-202ENST00000398417 KRTAP4-3Q9BYR4 195 aa1.68□□□□□ -2.14
SMAD4-202ENST00000398417 SPRR2DP22532 72 aa1.67□□□□□ -2.14
SMAD4-202ENST00000398417 MT1EP04732 61 aa1.67□□□□□ -2.14
SMAD4-202ENST00000398417 KRTAP9-6A8MVA2 160 aa1.66□□□□□ -2.14
SMAD4-202ENST00000398417 LOC100996750A0A140TA64 210 aa1.66□□□□□ -2.14
SMAD4-202ENST00000398417 KRTAP19-6Q3LI70 58 aa1.65□□□□□ -2.15
SMAD4-202ENST00000398417 LCE1AQ5T7P2 110 aa1.64□□□□□ -2.15
SMAD4-202ENST00000398417 KRTAP9-7A8MTY7 169 aa1.62□□□□□ -2.15
SMAD4-202ENST00000398417 LCE4AQ5TA78 99 aa1.62□□□□□ -2.15
SMAD4-202ENST00000398417 KRTAP6-3Q3LI67 103 aa1.6□□□□□ -2.15
SMAD4-202ENST00000398417 MT1MQ8N339 61 aa1.59□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP2-3P0C7H8 128 aa1.59□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP19-3Q7Z4W3 81 aa1.59□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP2-4Q9BYR9 128 aa1.59□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP2-1Q9BYU5 128 aa1.59□□□□□ -2.16
SMAD4-202ENST00000398417 AHNAKQ09666 5890 aaKnown RBP1.58□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP12-4P60329 112 aa1.58□□□□□ -2.16
SMAD4-202ENST00000398417 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.57□□□□□ -2.16
SMAD4-202ENST00000398417 MT4P47944 62 aa1.57□□□□□ -2.16
SMAD4-202ENST00000398417 NEBP20929 6669 aa1.56□□□□□ -2.16
SMAD4-202ENST00000398417 KRTAP4-9Q9BYQ8 210 aa1.53□□□□□ -2.17
SMAD4-202ENST00000398417 KMT2DO14686 5537 aa1.51□□□□□ -2.17
SMAD4-202ENST00000398417 SYNE1Q8NF91 8797 aaKnown RBP1.49□□□□□ -2.17
SMAD4-202ENST00000398417 KRTAP5-9P26371 169 aa1.49□□□□□ -2.17
SMAD4-202ENST00000398417 LCE1BQ5T7P3 118 aa1.48□□□□□ -2.17
SMAD4-202ENST00000398417 MACF1Q9UPN3 7388 aaKnown RBP1.48□□□□□ -2.17
SMAD4-202ENST00000398417 SYNE2Q8WXH0 6885 aaKnown RBP1.47□□□□□ -2.17
SMAD4-202ENST00000398417 LCE1DQ5T752 114 aa1.47□□□□□ -2.17
SMAD4-202ENST00000398417 KRTAP6-1Q3LI64 71 aa1.46□□□□□ -2.18
SMAD4-202ENST00000398417 PRM1P04553 51 aa1.45□□□□□ -2.18
SMAD4-202ENST00000398417 HMCN1Q96RW7 5635 aa1.45□□□□□ -2.18
SMAD4-202ENST00000398417 MT1AP04731 61 aa1.45□□□□□ -2.18
SMAD4-202ENST00000398417 AHNAK2Q8IVF2 5795 aa1.44□□□□□ -2.18
SMAD4-202ENST00000398417 LCE5AQ5TCM9 118 aa1.44□□□□□ -2.18
SMAD4-202ENST00000398417 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
SMAD4-202ENST00000398417 FCGBPQ9Y6R7 5405 aaPredicted RBP1.42□□□□□ -2.18
SMAD4-202ENST00000398417 KRTAP20-1Q3LI63 56 aa1.41□□□□□ -2.18
SMAD4-202ENST00000398417 MUC12Q9UKN1 5478 aa1.41□□□□□ -2.18
SMAD4-202ENST00000398417 OBSCNQ5VST9 7968 aa1.39□□□□□ -2.19
SMAD4-202ENST00000398417 KRTAP2-2Q9BYT5 123 aa1.37□□□□□ -2.19
SMAD4-202ENST00000398417 KRTAP9-4Q9BYQ2 154 aa1.36□□□□□ -2.19
SMAD4-202ENST00000398417 LCE1CQ5T751 118 aa1.36□□□□□ -2.19
SMAD4-202ENST00000398417 LCE1EQ5T753 118 aa1.36□□□□□ -2.19
SMAD4-202ENST00000398417 LCE1FQ5T754 118 aa1.36□□□□□ -2.19
SMAD4-202ENST00000398417 KRTAP6-2Q3LI66 62 aa1.32□□□□□ -2.2
SMAD4-202ENST00000398417 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
SMAD4-202ENST00000398417 DSTQ03001 7570 aaKnown RBP1.3□□□□□ -2.2
SMAD4-202ENST00000398417 KRTAP9-9Q9BYP9 154 aa1.29□□□□□ -2.2
SMAD4-202ENST00000398417 KRTAP5-5Q701N2 237 aaPredicted RBP1.28□□□□□ -2.2
SMAD4-202ENST00000398417 KRTAP5-4Q6L8H1 288 aa1.21□□□□□ -2.22
SMAD4-202ENST00000398417 KRTAP4-6Q9BYQ5 205 aa1.19□□□□□ -2.22
SMAD4-202ENST00000398417 KRTAP20-2Q3LI61 65 aa1.15□□□□□ -2.23
SMAD4-202ENST00000398417 MUC5ACP98088 5654 aa1.11□□□□□ -2.23
SMAD4-202ENST00000398417 KRTAP5-8O75690 187 aa1.11□□□□□ -2.23
SMAD4-202ENST00000398417 MUC19Q7Z5P9 8384 aa1.09□□□□□ -2.23
SMAD4-202ENST00000398417 KRTAP4-11Q9BYQ6 195 aa1.08□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP5-7Q6L8G8 165 aa1.08□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP5-3Q6L8H2 238 aa1.07□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP5-2Q701N4 177 aa1.07□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP4-4Q9BYR3 166 aa1.06□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP4-12Q9BQ66 201 aa1.04□□□□□ -2.24
SMAD4-202ENST00000398417 KRTAP5-10Q6L8G5 202 aa1.02□□□□□ -2.25
SMAD4-202ENST00000398417 KRTAP4-2Q9BYR5 136 aa1.02□□□□□ -2.25
SMAD4-202ENST00000398417 KRTAP5-1Q6L8H4 278 aa1.02□□□□□ -2.25
SMAD4-202ENST00000398417 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.97□□□□□ -2.25
SMAD4-202ENST00000398417 KRTAP5-11Q6L8G4 156 aa0.91□□□□□ -2.26
SMAD4-202ENST00000398417 KRTAP21-2Q3LI59 83 aa0.85□□□□□ -2.27
SMAD4-202ENST00000398417 KRTAP21-1Q3LI58 79 aa0.79□□□□□ -2.28
SMAD4-202ENST00000398417 PHGR1C9JFL3 82 aa0.78□□□□□ -2.28
SMAD4-202ENST00000398417 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 106.3 ms