RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 KRTAP6-3Q3LI67 103 aa6.65□□□□□ -1.34
CCDC88C-203ENST00000389856 KRTAP19-4Q3LI73 84 aa6.61□□□□□ -1.35
CCDC88C-203ENST00000389856 KMT2DO14686 5537 aa6.6□□□□□ -1.35
CCDC88C-203ENST00000389856 MT1EP04732 61 aa6.58□□□□□ -1.36
CCDC88C-203ENST00000389856 LCE3CQ5T5A8 94 aa6.48□□□□□ -1.37
CCDC88C-203ENST00000389856 SPRR2FQ96RM1 72 aa6.47□□□□□ -1.37
CCDC88C-203ENST00000389856 MUC12Q9UKN1 5478 aa6.46□□□□□ -1.37
CCDC88C-203ENST00000389856 MT1LQ93083 61 aa6.46□□□□□ -1.38
CCDC88C-203ENST00000389856 NEBP20929 6669 aa6.44□□□□□ -1.38
CCDC88C-203ENST00000389856 LCE3BQ5TA77 95 aa6.43□□□□□ -1.38
CCDC88C-203ENST00000389856 KRTAP5-9P26371 169 aa6.39□□□□□ -1.39
CCDC88C-203ENST00000389856 KRTAP19-3Q7Z4W3 81 aa6.36□□□□□ -1.39
CCDC88C-203ENST00000389856 KRTAP9-9Q9BYP9 154 aa6.34□□□□□ -1.39
CCDC88C-203ENST00000389856 KRTAP9-4Q9BYQ2 154 aa6.34□□□□□ -1.39
CCDC88C-203ENST00000389856 MT1GP13640 62 aa6.33□□□□□ -1.4
CCDC88C-203ENST00000389856 KRTAP4-12Q9BQ66 201 aa6.33□□□□□ -1.4
CCDC88C-203ENST00000389856 MDN1Q9NU22 5596 aa6.3□□□□□ -1.4
CCDC88C-203ENST00000389856 LCE5AQ5TCM9 118 aa6.21□□□□□ -1.42
CCDC88C-203ENST00000389856 MT1MQ8N339 61 aa6.2□□□□□ -1.42
CCDC88C-203ENST00000389856 KRTAP20-1Q3LI63 56 aa6.17□□□□□ -1.42
CCDC88C-203ENST00000389856 LCE1AQ5T7P2 110 aa6.15□□□□□ -1.42
CCDC88C-203ENST00000389856 SPRR2EP22531 72 aa6.14□□□□□ -1.43
CCDC88C-203ENST00000389856 SPRR2BP35325 72 aa6.14□□□□□ -1.43
CCDC88C-203ENST00000389856 SPRR2AP35326 72 aa6.14□□□□□ -1.43
CCDC88C-203ENST00000389856 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
CCDC88C-203ENST00000389856 INE1O15225 51 aa6.12□□□□□ -1.43
CCDC88C-203ENST00000389856 KRTAP9-6A8MVA2 160 aa6.07□□□□□ -1.44
CCDC88C-203ENST00000389856 LCE1DQ5T752 114 aa6□□□□□ -1.45
CCDC88C-203ENST00000389856 KRTAP2-3P0C7H8 128 aa5.99□□□□□ -1.45
CCDC88C-203ENST00000389856 KRTAP2-4Q9BYR9 128 aa5.99□□□□□ -1.45
CCDC88C-203ENST00000389856 KRTAP4-3Q9BYR4 195 aa5.98□□□□□ -1.45
CCDC88C-203ENST00000389856 SPRR2DP22532 72 aa5.94□□□□□ -1.46
CCDC88C-203ENST00000389856 KRTAP2-1Q9BYU5 128 aa5.94□□□□□ -1.46
CCDC88C-203ENST00000389856 KRTAP4-9Q9BYQ8 210 aa5.88□□□□□ -1.47
CCDC88C-203ENST00000389856 KRTAP4-2Q9BYR5 136 aa5.84□□□□□ -1.47
CCDC88C-203ENST00000389856 KRTAP2-2Q9BYT5 123 aa5.81□□□□□ -1.48
CCDC88C-203ENST00000389856 DSTQ03001 7570 aaKnown RBP5.65□□□□□ -1.5
CCDC88C-203ENST00000389856 KRTAP4-11Q9BYQ6 195 aa5.61□□□□□ -1.51
CCDC88C-203ENST00000389856 KRTAP5-5Q701N2 237 aaPredicted RBP5.56□□□□□ -1.52
CCDC88C-203ENST00000389856 MT1AP04731 61 aa5.52□□□□□ -1.53
CCDC88C-203ENST00000389856 LCE4AQ5TA78 99 aa5.46□□□□□ -1.54
CCDC88C-203ENST00000389856 KRTAP5-3Q6L8H2 238 aa5.45□□□□□ -1.54
CCDC88C-203ENST00000389856 KRTAP6-1Q3LI64 71 aa5.4□□□□□ -1.55
CCDC88C-203ENST00000389856 KRTAP5-4Q6L8H1 288 aa5.33□□□□□ -1.56
CCDC88C-203ENST00000389856 KRTAP12-4P60329 112 aa5.28□□□□□ -1.56
CCDC88C-203ENST00000389856 GPR98Q8WXG9 6306 aa5.2□□□□□ -1.58
CCDC88C-203ENST00000389856 MT4P47944 62 aa5.19□□□□□ -1.58
CCDC88C-203ENST00000389856 HMCN1Q96RW7 5635 aa5.18□□□□□ -1.58
CCDC88C-203ENST00000389856 SYNE1Q8NF91 8797 aaKnown RBP5.17□□□□□ -1.58
CCDC88C-203ENST00000389856 MT3P25713 68 aa5.04□□□□□ -1.6
CCDC88C-203ENST00000389856 KRTAP6-2Q3LI66 62 aa5□□□□□ -1.61
CCDC88C-203ENST00000389856 KRTAP20-2Q3LI61 65 aa4.98□□□□□ -1.61
CCDC88C-203ENST00000389856 LCE3DQ9BYE3 92 aa4.96□□□□□ -1.62
CCDC88C-203ENST00000389856 AHNAK2Q8IVF2 5795 aa4.93□□□□□ -1.62
CCDC88C-203ENST00000389856 LCE3EQ5T5B0 92 aa4.9□□□□□ -1.63
CCDC88C-203ENST00000389856 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
CCDC88C-203ENST00000389856 KRTAP5-10Q6L8G5 202 aa4.83□□□□□ -1.64
CCDC88C-203ENST00000389856 KRTAP5-7Q6L8G8 165 aa4.61□□□□□ -1.67
CCDC88C-203ENST00000389856 PRM1P04553 51 aa4.46□□□□□ -1.7
CCDC88C-203ENST00000389856 OBSCNQ5VST9 7968 aa4.43□□□□□ -1.7
CCDC88C-203ENST00000389856 LCE1EQ5T753 118 aa4.38□□□□□ -1.71
CCDC88C-203ENST00000389856 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
CCDC88C-203ENST00000389856 KRTAP5-1Q6L8H4 278 aa4.14□□□□□ -1.75
CCDC88C-203ENST00000389856 MUC5BQ9HC84 5762 aaPredicted RBP4.08□□□□□ -1.76
CCDC88C-203ENST00000389856 MUC5ACP98088 5654 aa4.07□□□□□ -1.76
CCDC88C-203ENST00000389856 LCE1CQ5T751 118 aa4.06□□□□□ -1.76
CCDC88C-203ENST00000389856 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
CCDC88C-203ENST00000389856 AHNAKQ09666 5890 aaKnown RBP4.03□□□□□ -1.76
CCDC88C-203ENST00000389856 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.99□□□□□ -1.77
CCDC88C-203ENST00000389856 KRTAP5-11Q6L8G4 156 aa3.79□□□□□ -1.8
CCDC88C-203ENST00000389856 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
CCDC88C-203ENST00000389856 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
CCDC88C-203ENST00000389856 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
CCDC88C-203ENST00000389856 PHGR1C9JFL3 82 aa3.05□□□□□ -1.92
CCDC88C-203ENST00000389856 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
CCDC88C-203ENST00000389856 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CCDC88C-203ENST00000389856 MUC16Q8WXI7 14507 aa1.94□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 6.7 ms