RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 KRTAP19-7Q3SYF9 63 aa8.39□□□□□ -1.07
VPS16-201ENST00000380443 LCE3CQ5T5A8 94 aa8.37□□□□□ -1.07
VPS16-201ENST00000380443 KMT2DO14686 5537 aa8.25□□□□□ -1.09
VPS16-201ENST00000380443 MT1EP04732 61 aa8.22□□□□□ -1.09
VPS16-201ENST00000380443 KRTAP5-9P26371 169 aa8.21□□□□□ -1.1
VPS16-201ENST00000380443 MT1LQ93083 61 aa8.14□□□□□ -1.11
VPS16-201ENST00000380443 SPRR2FQ96RM1 72 aa8.07□□□□□ -1.12
VPS16-201ENST00000380443 MUC12Q9UKN1 5478 aa8.06□□□□□ -1.12
VPS16-201ENST00000380443 INE1O15225 51 aa8.02□□□□□ -1.13
VPS16-201ENST00000380443 NEBP20929 6669 aa7.92□□□□□ -1.14
VPS16-201ENST00000380443 MDN1Q9NU22 5596 aa7.91□□□□□ -1.14
VPS16-201ENST00000380443 KRTAP4-7Q9BYR0 210 aa7.87□□□□□ -1.15
VPS16-201ENST00000380443 SPRR2EP22531 72 aa7.87□□□□□ -1.15
VPS16-201ENST00000380443 SPRR2BP35325 72 aa7.87□□□□□ -1.15
VPS16-201ENST00000380443 SPRR2AP35326 72 aa7.87□□□□□ -1.15
VPS16-201ENST00000380443 KRTAP9-6A8MVA2 160 aa7.86□□□□□ -1.15
VPS16-201ENST00000380443 MT1GP13640 62 aa7.82□□□□□ -1.16
VPS16-201ENST00000380443 KRTAP19-3Q7Z4W3 81 aa7.82□□□□□ -1.16
VPS16-201ENST00000380443 LCE1AQ5T7P2 110 aa7.79□□□□□ -1.16
VPS16-201ENST00000380443 MT1MQ8N339 61 aa7.71□□□□□ -1.18
VPS16-201ENST00000380443 KRTAP20-1Q3LI63 56 aa7.66□□□□□ -1.18
VPS16-201ENST00000380443 SPRR2DP22532 72 aa7.6□□□□□ -1.19
VPS16-201ENST00000380443 LCE5AQ5TCM9 118 aa7.6□□□□□ -1.19
VPS16-201ENST00000380443 KRTAP2-3P0C7H8 128 aa7.59□□□□□ -1.19
VPS16-201ENST00000380443 KRTAP2-4Q9BYR9 128 aa7.59□□□□□ -1.19
VPS16-201ENST00000380443 KRTAP2-1Q9BYU5 128 aa7.59□□□□□ -1.19
VPS16-201ENST00000380443 KRTAP4-3Q9BYR4 195 aa7.51□□□□□ -1.21
VPS16-201ENST00000380443 LOC100996750A0A140TA64 210 aa7.38□□□□□ -1.23
VPS16-201ENST00000380443 LCE3BQ5TA77 95 aa7.36□□□□□ -1.23
VPS16-201ENST00000380443 KRTAP2-2Q9BYT5 123 aa7.36□□□□□ -1.23
VPS16-201ENST00000380443 DSTQ03001 7570 aaKnown RBP7.16□□□□□ -1.26
VPS16-201ENST00000380443 MT1AP04731 61 aa6.94□□□□□ -1.3
VPS16-201ENST00000380443 KRTAP5-5Q701N2 237 aaPredicted RBP6.9□□□□□ -1.3
VPS16-201ENST00000380443 KRTAP6-1Q3LI64 71 aa6.83□□□□□ -1.32
VPS16-201ENST00000380443 LCE4AQ5TA78 99 aa6.76□□□□□ -1.33
VPS16-201ENST00000380443 KRTAP4-9Q9BYQ8 210 aa6.71□□□□□ -1.33
VPS16-201ENST00000380443 KRTAP5-4Q6L8H1 288 aa6.66□□□□□ -1.34
VPS16-201ENST00000380443 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
VPS16-201ENST00000380443 GPR98Q8WXG9 6306 aa6.6□□□□□ -1.35
VPS16-201ENST00000380443 MT4P47944 62 aa6.6□□□□□ -1.35
VPS16-201ENST00000380443 KRTAP9-4Q9BYQ2 154 aa6.55□□□□□ -1.36
VPS16-201ENST00000380443 KRTAP12-4P60329 112 aa6.53□□□□□ -1.36
VPS16-201ENST00000380443 HMCN1Q96RW7 5635 aa6.47□□□□□ -1.37
VPS16-201ENST00000380443 KRTAP4-6Q9BYQ5 205 aa6.43□□□□□ -1.38
VPS16-201ENST00000380443 SYNE1Q8NF91 8797 aaKnown RBP6.41□□□□□ -1.38
VPS16-201ENST00000380443 LCE3DQ9BYE3 92 aa6.38□□□□□ -1.39
VPS16-201ENST00000380443 MT3P25713 68 aa6.28□□□□□ -1.4
VPS16-201ENST00000380443 KRTAP20-2Q3LI61 65 aa6.27□□□□□ -1.41
VPS16-201ENST00000380443 LCE3EQ5T5B0 92 aa6.27□□□□□ -1.41
VPS16-201ENST00000380443 KRTAP6-2Q3LI66 62 aa6.2□□□□□ -1.42
VPS16-201ENST00000380443 KRTAP5-3Q6L8H2 238 aa6.06□□□□□ -1.44
VPS16-201ENST00000380443 AHNAK2Q8IVF2 5795 aa6.04□□□□□ -1.44
VPS16-201ENST00000380443 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
VPS16-201ENST00000380443 KRTAP5-2Q701N4 177 aa5.9□□□□□ -1.47
VPS16-201ENST00000380443 KRTAP5-7Q6L8G8 165 aa5.69□□□□□ -1.5
VPS16-201ENST00000380443 PRM1P04553 51 aa5.67□□□□□ -1.5
VPS16-201ENST00000380443 KRTAP4-11Q9BYQ6 195 aa5.64□□□□□ -1.51
VPS16-201ENST00000380443 OBSCNQ5VST9 7968 aa5.55□□□□□ -1.52
VPS16-201ENST00000380443 KRTAP5-8O75690 187 aa5.42□□□□□ -1.54
VPS16-201ENST00000380443 LCE1EQ5T753 118 aa5.34□□□□□ -1.55
VPS16-201ENST00000380443 KRTAP5-1Q6L8H4 278 aa5.22□□□□□ -1.57
VPS16-201ENST00000380443 KRTAP9-9Q9BYP9 154 aa5.13□□□□□ -1.59
VPS16-201ENST00000380443 AHNAKQ09666 5890 aaKnown RBP5.06□□□□□ -1.6
VPS16-201ENST00000380443 MUC5ACP98088 5654 aa5.02□□□□□ -1.61
VPS16-201ENST00000380443 LCE1CQ5T751 118 aa4.97□□□□□ -1.61
VPS16-201ENST00000380443 LCE1BQ5T7P3 118 aa4.97□□□□□ -1.61
VPS16-201ENST00000380443 MUC5BQ9HC84 5762 aaPredicted RBP4.96□□□□□ -1.61
VPS16-201ENST00000380443 KRTAP4-2Q9BYR5 136 aa4.9□□□□□ -1.62
VPS16-201ENST00000380443 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.72□□□□□ -1.65
VPS16-201ENST00000380443 KRTAP21-2Q3LI59 83 aa4.47□□□□□ -1.69
VPS16-201ENST00000380443 KRTAP5-11Q6L8G4 156 aa4.33□□□□□ -1.72
VPS16-201ENST00000380443 KRTAP4-12Q9BQ66 201 aa4.21□□□□□ -1.74
VPS16-201ENST00000380443 LCE1FQ5T754 118 aa4.13□□□□□ -1.75
VPS16-201ENST00000380443 KRTAP4-4Q9BYR3 166 aa3.88□□□□□ -1.79
VPS16-201ENST00000380443 PHGR1C9JFL3 82 aa3.7□□□□□ -1.82
VPS16-201ENST00000380443 KRTAP21-1Q3LI58 79 aa3.6□□□□□ -1.83
VPS16-201ENST00000380443 MUC19Q7Z5P9 8384 aa3.32□□□□□ -1.88
VPS16-201ENST00000380443 MUC16Q8WXI7 14507 aa2.44□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 88.9 ms