RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 FAT4Q6V0I7 4981 aa5.77□□□□□ -1.49
CLSTN1-202ENST00000377298 RNF213Q63HN8 5207 aa5.75□□□□□ -1.49
CLSTN1-202ENST00000377298 UBR4Q5T4S7 5183 aa5.74□□□□□ -1.49
CLSTN1-202ENST00000377298 MT1MQ8N339 61 aa5.73□□□□□ -1.49
CLSTN1-202ENST00000377298 LCE3EQ5T5B0 92 aa5.67□□□□□ -1.5
CLSTN1-202ENST00000377298 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.5
CLSTN1-202ENST00000377298 MT4P47944 62 aa5.62□□□□□ -1.51
CLSTN1-202ENST00000377298 HMCN2Q8NDA2 5059 aa5.54□□□□□ -1.52
CLSTN1-202ENST00000377298 MT3P25713 68 aa5.54□□□□□ -1.52
CLSTN1-202ENST00000377298 FSIP2Q5CZC0 6907 aa5.54□□□□□ -1.52
CLSTN1-202ENST00000377298 KRTAP19-7Q3SYF9 63 aa5.53□□□□□ -1.52
CLSTN1-202ENST00000377298 KRTAP4-3Q9BYR4 195 aa5.46□□□□□ -1.54
CLSTN1-202ENST00000377298 LOC100996750A0A140TA64 210 aa5.44□□□□□ -1.54
CLSTN1-202ENST00000377298 KRTAP20-1Q3LI63 56 aa5.33□□□□□ -1.56
CLSTN1-202ENST00000377298 KRTAP9-7A8MTY7 169 aa5.33□□□□□ -1.56
CLSTN1-202ENST00000377298 MT1AP04731 61 aa5.32□□□□□ -1.56
CLSTN1-202ENST00000377298 MUC2Q02817 5179 aa5.32□□□□□ -1.56
CLSTN1-202ENST00000377298 LCE1BQ5T7P3 118 aa5.3□□□□□ -1.56
CLSTN1-202ENST00000377298 LCE1DQ5T752 114 aa5.29□□□□□ -1.56
CLSTN1-202ENST00000377298 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
CLSTN1-202ENST00000377298 KRTAP6-3Q3LI67 103 aa5.27□□□□□ -1.57
CLSTN1-202ENST00000377298 KRTAP2-3P0C7H8 128 aa5.25□□□□□ -1.57
CLSTN1-202ENST00000377298 KRTAP2-4Q9BYR9 128 aa5.25□□□□□ -1.57
CLSTN1-202ENST00000377298 KRTAP2-1Q9BYU5 128 aa5.25□□□□□ -1.57
CLSTN1-202ENST00000377298 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.58
CLSTN1-202ENST00000377298 PRM1P04553 51 aa5.16□□□□□ -1.58
CLSTN1-202ENST00000377298 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.11□□□□□ -1.59
CLSTN1-202ENST00000377298 LCE5AQ5TCM9 118 aa5.1□□□□□ -1.59
CLSTN1-202ENST00000377298 KRTAP9-6A8MVA2 160 aa5.08□□□□□ -1.6
CLSTN1-202ENST00000377298 OBSCNQ5VST9 7968 aa5□□□□□ -1.61
CLSTN1-202ENST00000377298 KRTAP4-9Q9BYQ8 210 aa4.97□□□□□ -1.61
CLSTN1-202ENST00000377298 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
CLSTN1-202ENST00000377298 KRTAP2-2Q9BYT5 123 aa4.96□□□□□ -1.62
CLSTN1-202ENST00000377298 KRTAP6-1Q3LI64 71 aa4.95□□□□□ -1.62
CLSTN1-202ENST00000377298 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
CLSTN1-202ENST00000377298 KRTAP6-2Q3LI66 62 aa4.87□□□□□ -1.63
CLSTN1-202ENST00000377298 USH2AO75445 5202 aa4.84□□□□□ -1.64
CLSTN1-202ENST00000377298 FCGBPQ9Y6R7 5405 aaPredicted RBP4.63□□□□□ -1.67
CLSTN1-202ENST00000377298 KRTAP5-9P26371 169 aa4.59□□□□□ -1.67
CLSTN1-202ENST00000377298 MACF1Q9UPN3 7388 aaKnown RBP4.56□□□□□ -1.68
CLSTN1-202ENST00000377298 LCE1CQ5T751 118 aa4.55□□□□□ -1.68
CLSTN1-202ENST00000377298 LCE1EQ5T753 118 aa4.55□□□□□ -1.68
CLSTN1-202ENST00000377298 LCE1FQ5T754 118 aa4.55□□□□□ -1.68
CLSTN1-202ENST00000377298 DSTQ03001 7570 aaKnown RBP4.53□□□□□ -1.68
CLSTN1-202ENST00000377298 KMT2DO14686 5537 aa4.53□□□□□ -1.68
CLSTN1-202ENST00000377298 SSPOA2VEC9 5147 aa4.43□□□□□ -1.7
CLSTN1-202ENST00000377298 NEBP20929 6669 aa4.4□□□□□ -1.71
CLSTN1-202ENST00000377298 KRTAP9-9Q9BYP9 154 aa4.36□□□□□ -1.71
CLSTN1-202ENST00000377298 GPR98Q8WXG9 6306 aa4.32□□□□□ -1.72
CLSTN1-202ENST00000377298 MUC12Q9UKN1 5478 aa4.28□□□□□ -1.72
CLSTN1-202ENST00000377298 MUC19Q7Z5P9 8384 aa4.21□□□□□ -1.74
CLSTN1-202ENST00000377298 KRTAP4-6Q9BYQ5 205 aa4.2□□□□□ -1.74
CLSTN1-202ENST00000377298 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
CLSTN1-202ENST00000377298 MDN1Q9NU22 5596 aa4.18□□□□□ -1.74
CLSTN1-202ENST00000377298 KRTAP5-4Q6L8H1 288 aa3.95□□□□□ -1.78
CLSTN1-202ENST00000377298 KRTAP5-5Q701N2 237 aaPredicted RBP3.86□□□□□ -1.79
CLSTN1-202ENST00000377298 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
CLSTN1-202ENST00000377298 KRTAP4-12Q9BQ66 201 aa3.68□□□□□ -1.82
CLSTN1-202ENST00000377298 KRTAP4-2Q9BYR5 136 aa3.68□□□□□ -1.82
CLSTN1-202ENST00000377298 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
CLSTN1-202ENST00000377298 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
CLSTN1-202ENST00000377298 MUC5ACP98088 5654 aa3.4□□□□□ -1.87
CLSTN1-202ENST00000377298 AHNAK2Q8IVF2 5795 aa3.37□□□□□ -1.87
CLSTN1-202ENST00000377298 HMCN1Q96RW7 5635 aa3.28□□□□□ -1.88
CLSTN1-202ENST00000377298 KRTAP5-2Q701N4 177 aa3.18□□□□□ -1.9
CLSTN1-202ENST00000377298 KRTAP5-8O75690 187 aa3.16□□□□□ -1.9
CLSTN1-202ENST00000377298 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
CLSTN1-202ENST00000377298 PHGR1C9JFL3 82 aa2.87□□□□□ -1.95
CLSTN1-202ENST00000377298 MUC5BQ9HC84 5762 aaPredicted RBP2.83□□□□□ -1.96
CLSTN1-202ENST00000377298 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
CLSTN1-202ENST00000377298 AHNAKQ09666 5890 aaKnown RBP2.8□□□□□ -1.96
CLSTN1-202ENST00000377298 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
CLSTN1-202ENST00000377298 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
CLSTN1-202ENST00000377298 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
CLSTN1-202ENST00000377298 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
CLSTN1-202ENST00000377298 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
CLSTN1-202ENST00000377298 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 66.8 ms