RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 KRTAP19-7Q3SYF9 63 aa6.61□□□□□ -1.35
HLA-DQB1-201ENST00000374943 LUZP6Q538Z0 58 aa6.61□□□□□ -1.35
HLA-DQB1-201ENST00000374943 MUC12Q9UKN1 5478 aa6.6□□□□□ -1.35
HLA-DQB1-201ENST00000374943 MT1EP04732 61 aa6.47□□□□□ -1.37
HLA-DQB1-201ENST00000374943 KRTAP5-9P26371 169 aa6.45□□□□□ -1.38
HLA-DQB1-201ENST00000374943 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
HLA-DQB1-201ENST00000374943 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
HLA-DQB1-201ENST00000374943 MT1LQ93083 61 aa6.38□□□□□ -1.39
HLA-DQB1-201ENST00000374943 MDN1Q9NU22 5596 aa6.32□□□□□ -1.4
HLA-DQB1-201ENST00000374943 KRTAP2-3P0C7H8 128 aa6.32□□□□□ -1.4
HLA-DQB1-201ENST00000374943 KRTAP2-4Q9BYR9 128 aa6.32□□□□□ -1.4
HLA-DQB1-201ENST00000374943 H3BS24 57 aa6.27□□□□□ -1.41
HLA-DQB1-201ENST00000374943 SPRR2EP22531 72 aa6.18□□□□□ -1.42
HLA-DQB1-201ENST00000374943 SPRR2BP35325 72 aa6.18□□□□□ -1.42
HLA-DQB1-201ENST00000374943 SPRR2AP35326 72 aa6.18□□□□□ -1.42
HLA-DQB1-201ENST00000374943 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
HLA-DQB1-201ENST00000374943 SPRR2FQ96RM1 72 aa6.17□□□□□ -1.42
HLA-DQB1-201ENST00000374943 KRTAP19-3Q7Z4W3 81 aa6.16□□□□□ -1.42
HLA-DQB1-201ENST00000374943 MT1GP13640 62 aa6.12□□□□□ -1.43
HLA-DQB1-201ENST00000374943 KRTAP9-6A8MVA2 160 aa6.11□□□□□ -1.43
HLA-DQB1-201ENST00000374943 KRTAP2-2Q9BYT5 123 aa6.1□□□□□ -1.43
HLA-DQB1-201ENST00000374943 KRTAP2-1Q9BYU5 128 aa6.1□□□□□ -1.43
HLA-DQB1-201ENST00000374943 MT1MQ8N339 61 aa6.07□□□□□ -1.44
HLA-DQB1-201ENST00000374943 LCE1AQ5T7P2 110 aa6.04□□□□□ -1.44
HLA-DQB1-201ENST00000374943 LCE5AQ5TCM9 118 aa6.03□□□□□ -1.44
HLA-DQB1-201ENST00000374943 SPRR2DP22532 72 aa5.98□□□□□ -1.45
HLA-DQB1-201ENST00000374943 KRTAP4-3Q9BYR4 195 aa5.94□□□□□ -1.46
HLA-DQB1-201ENST00000374943 A0A0A0MQY5 61 aa5.91□□□□□ -1.46
HLA-DQB1-201ENST00000374943 LCE3BQ5TA77 95 aa5.85□□□□□ -1.47
HLA-DQB1-201ENST00000374943 GPR98Q8WXG9 6306 aa5.76□□□□□ -1.49
HLA-DQB1-201ENST00000374943 DSTQ03001 7570 aaKnown RBP5.62□□□□□ -1.51
HLA-DQB1-201ENST00000374943 KRTAP4-9Q9BYQ8 210 aa5.56□□□□□ -1.52
HLA-DQB1-201ENST00000374943 INE1O15225 51 aa5.52□□□□□ -1.53
HLA-DQB1-201ENST00000374943 KRTAP5-5Q701N2 237 aaPredicted RBP5.47□□□□□ -1.53
HLA-DQB1-201ENST00000374943 MT1AP04731 61 aa5.42□□□□□ -1.54
HLA-DQB1-201ENST00000374943 LCE1DQ5T752 114 aa5.37□□□□□ -1.55
HLA-DQB1-201ENST00000374943 KRTAP9-9Q9BYP9 154 aa5.37□□□□□ -1.55
HLA-DQB1-201ENST00000374943 KRTAP9-4Q9BYQ2 154 aa5.37□□□□□ -1.55
HLA-DQB1-201ENST00000374943 KRTAP6-1Q3LI64 71 aa5.36□□□□□ -1.55
HLA-DQB1-201ENST00000374943 MT4P47944 62 aa5.27□□□□□ -1.57
HLA-DQB1-201ENST00000374943 LCE4AQ5TA78 99 aa5.24□□□□□ -1.57
HLA-DQB1-201ENST00000374943 KRTAP4-12Q9BQ66 201 aa5.23□□□□□ -1.57
HLA-DQB1-201ENST00000374943 AHNAK2Q8IVF2 5795 aa5.22□□□□□ -1.57
HLA-DQB1-201ENST00000374943 HMCN1Q96RW7 5635 aa5.22□□□□□ -1.57
HLA-DQB1-201ENST00000374943 KRTAP5-10Q6L8G5 202 aa5.2□□□□□ -1.58
HLA-DQB1-201ENST00000374943 SYNE1Q8NF91 8797 aaKnown RBP5.14□□□□□ -1.59
HLA-DQB1-201ENST00000374943 KRTAP5-4Q6L8H1 288 aa5.1□□□□□ -1.59
HLA-DQB1-201ENST00000374943 KRTAP4-2Q9BYR5 136 aa5.09□□□□□ -1.59
HLA-DQB1-201ENST00000374943 KRTAP5-3Q6L8H2 238 aa5.07□□□□□ -1.6
HLA-DQB1-201ENST00000374943 KRTAP5-7Q6L8G8 165 aa5.05□□□□□ -1.6
HLA-DQB1-201ENST00000374943 KRTAP12-4P60329 112 aa4.97□□□□□ -1.61
HLA-DQB1-201ENST00000374943 MT3P25713 68 aa4.89□□□□□ -1.63
HLA-DQB1-201ENST00000374943 KRTAP6-2Q3LI66 62 aa4.89□□□□□ -1.63
HLA-DQB1-201ENST00000374943 LCE3DQ9BYE3 92 aa4.87□□□□□ -1.63
HLA-DQB1-201ENST00000374943 KRTAP20-2Q3LI61 65 aa4.83□□□□□ -1.64
HLA-DQB1-201ENST00000374943 LCE3EQ5T5B0 92 aa4.77□□□□□ -1.65
HLA-DQB1-201ENST00000374943 KRTAP4-11Q9BYQ6 195 aa4.74□□□□□ -1.65
HLA-DQB1-201ENST00000374943 KRTAP5-2Q701N4 177 aa4.68□□□□□ -1.66
HLA-DQB1-201ENST00000374943 OBSCNQ5VST9 7968 aa4.46□□□□□ -1.7
HLA-DQB1-201ENST00000374943 KRTAP5-8O75690 187 aa4.37□□□□□ -1.71
HLA-DQB1-201ENST00000374943 AHNAKQ09666 5890 aaKnown RBP4.37□□□□□ -1.71
HLA-DQB1-201ENST00000374943 MUC5ACP98088 5654 aa4.36□□□□□ -1.71
HLA-DQB1-201ENST00000374943 MUC5BQ9HC84 5762 aaPredicted RBP4.3□□□□□ -1.72
HLA-DQB1-201ENST00000374943 PRM1P04553 51 aa4.28□□□□□ -1.72
HLA-DQB1-201ENST00000374943 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
HLA-DQB1-201ENST00000374943 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
HLA-DQB1-201ENST00000374943 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
HLA-DQB1-201ENST00000374943 LCE1BQ5T7P3 118 aa3.91□□□□□ -1.78
HLA-DQB1-201ENST00000374943 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.71□□□□□ -1.82
HLA-DQB1-201ENST00000374943 KRTAP21-2Q3LI59 83 aa3.52□□□□□ -1.85
HLA-DQB1-201ENST00000374943 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
HLA-DQB1-201ENST00000374943 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
HLA-DQB1-201ENST00000374943 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
HLA-DQB1-201ENST00000374943 PHGR1C9JFL3 82 aa3.05□□□□□ -1.92
HLA-DQB1-201ENST00000374943 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
HLA-DQB1-201ENST00000374943 MUC19Q7Z5P9 8384 aa2.6□□□□□ -1.99
HLA-DQB1-201ENST00000374943 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 117.4 ms