RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 MT1MQ8N339 61 aa5.48□□□□□ -1.53
PTPRU-202ENST00000373779 LCE3EQ5T5B0 92 aa5.46□□□□□ -1.54
PTPRU-202ENST00000373779 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
PTPRU-202ENST00000373779 KRTAP19-6Q3LI70 58 aa5.43□□□□□ -1.54
PTPRU-202ENST00000373779 KRTAP2-3P0C7H8 128 aa5.43□□□□□ -1.54
PTPRU-202ENST00000373779 KRTAP2-4Q9BYR9 128 aa5.43□□□□□ -1.54
PTPRU-202ENST00000373779 KRTAP2-1Q9BYU5 128 aa5.43□□□□□ -1.54
PTPRU-202ENST00000373779 KRTAP4-3Q9BYR4 195 aa5.41□□□□□ -1.54
PTPRU-202ENST00000373779 LCE2AQ5TA79 106 aaPredicted RBP5.39□□□□□ -1.55
PTPRU-202ENST00000373779 SPRR2DP22532 72 aa5.38□□□□□ -1.55
PTPRU-202ENST00000373779 KRTAP9-6A8MVA2 160 aa5.31□□□□□ -1.56
PTPRU-202ENST00000373779 PRM1P04553 51 aa5.15□□□□□ -1.58
PTPRU-202ENST00000373779 FSIP2Q5CZC0 6907 aa5.09□□□□□ -1.6
PTPRU-202ENST00000373779 MT1AP04731 61 aa5.06□□□□□ -1.6
PTPRU-202ENST00000373779 KRTAP4-9Q9BYQ8 210 aa5.06□□□□□ -1.6
PTPRU-202ENST00000373779 MT3P25713 68 aa5.05□□□□□ -1.6
PTPRU-202ENST00000373779 LCE2DQ5TA82 110 aaPredicted RBP5□□□□□ -1.61
PTPRU-202ENST00000373779 SYNE1Q8NF91 8797 aaKnown RBP4.94□□□□□ -1.62
PTPRU-202ENST00000373779 LCE5AQ5TCM9 118 aa4.89□□□□□ -1.63
PTPRU-202ENST00000373779 KRTAP6-1Q3LI64 71 aa4.88□□□□□ -1.63
PTPRU-202ENST00000373779 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
PTPRU-202ENST00000373779 KMT2DO14686 5537 aa4.83□□□□□ -1.64
PTPRU-202ENST00000373779 USH2AO75445 5202 aa4.81□□□□□ -1.64
PTPRU-202ENST00000373779 MT4P47944 62 aa4.76□□□□□ -1.65
PTPRU-202ENST00000373779 SYNE2Q8WXH0 6885 aaKnown RBP4.75□□□□□ -1.65
PTPRU-202ENST00000373779 KRTAP9-4Q9BYQ2 154 aa4.68□□□□□ -1.66
PTPRU-202ENST00000373779 KRTAP6-2Q3LI66 62 aa4.68□□□□□ -1.66
PTPRU-202ENST00000373779 LCE1AQ5T7P2 110 aa4.66□□□□□ -1.66
PTPRU-202ENST00000373779 KRTAP9-7A8MTY7 169 aa4.64□□□□□ -1.67
PTPRU-202ENST00000373779 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
PTPRU-202ENST00000373779 LCE1DQ5T752 114 aa4.59□□□□□ -1.67
PTPRU-202ENST00000373779 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
PTPRU-202ENST00000373779 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
PTPRU-202ENST00000373779 KRTAP9-6A0A140TA67 174 aa4.54□□□□□ -1.68
PTPRU-202ENST00000373779 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
PTPRU-202ENST00000373779 KRTAP6-3Q3LI67 103 aa4.44□□□□□ -1.7
PTPRU-202ENST00000373779 SSPOA2VEC9 5147 aa4.4□□□□□ -1.7
PTPRU-202ENST00000373779 MUC12Q9UKN1 5478 aa4.34□□□□□ -1.71
PTPRU-202ENST00000373779 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.26□□□□□ -1.73
PTPRU-202ENST00000373779 LCE4AQ5TA78 99 aa4.26□□□□□ -1.73
PTPRU-202ENST00000373779 MACF1Q9UPN3 7388 aaKnown RBP4.25□□□□□ -1.73
PTPRU-202ENST00000373779 KRTAP5-9P26371 169 aa4.2□□□□□ -1.74
PTPRU-202ENST00000373779 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
PTPRU-202ENST00000373779 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
PTPRU-202ENST00000373779 KRTAP5-5Q701N2 237 aaPredicted RBP4.05□□□□□ -1.76
PTPRU-202ENST00000373779 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.79
PTPRU-202ENST00000373779 KRTAP20-2Q3LI61 65 aa3.84□□□□□ -1.8
PTPRU-202ENST00000373779 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
PTPRU-202ENST00000373779 NEBP20929 6669 aa3.73□□□□□ -1.81
PTPRU-202ENST00000373779 MDN1Q9NU22 5596 aa3.73□□□□□ -1.81
PTPRU-202ENST00000373779 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
PTPRU-202ENST00000373779 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
PTPRU-202ENST00000373779 LCE1FQ5T754 118 aa3.61□□□□□ -1.83
PTPRU-202ENST00000373779 KRTAP5-4Q6L8H1 288 aa3.57□□□□□ -1.84
PTPRU-202ENST00000373779 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
PTPRU-202ENST00000373779 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
PTPRU-202ENST00000373779 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
PTPRU-202ENST00000373779 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
PTPRU-202ENST00000373779 KRTAP4-2Q9BYR5 136 aa3.2□□□□□ -1.9
PTPRU-202ENST00000373779 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
PTPRU-202ENST00000373779 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.9
PTPRU-202ENST00000373779 KRTAP5-10Q6L8G5 202 aa3.14□□□□□ -1.91
PTPRU-202ENST00000373779 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
PTPRU-202ENST00000373779 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
PTPRU-202ENST00000373779 HMCN1Q96RW7 5635 aa2.99□□□□□ -1.93
PTPRU-202ENST00000373779 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
PTPRU-202ENST00000373779 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
PTPRU-202ENST00000373779 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
PTPRU-202ENST00000373779 KRTAP21-2Q3LI59 83 aa2.71□□□□□ -1.98
PTPRU-202ENST00000373779 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.99
PTPRU-202ENST00000373779 MUC5BQ9HC84 5762 aaPredicted RBP2.6□□□□□ -1.99
PTPRU-202ENST00000373779 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.56□□□□□ -2
PTPRU-202ENST00000373779 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
PTPRU-202ENST00000373779 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
PTPRU-202ENST00000373779 PHGR1C9JFL3 82 aa2.24□□□□□ -2.05
PTPRU-202ENST00000373779 KRTAP5-7Q6L8G8 165 aa2.24□□□□□ -2.05
PTPRU-202ENST00000373779 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 6.6 ms