RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 KRTAP2-3P0C7H8 128 aa3.81□□□□□ -1.8
PTPN1-201ENST00000371621 KRTAP2-4Q9BYR9 128 aa3.81□□□□□ -1.8
PTPN1-201ENST00000371621 KRTAP2-1Q9BYU5 128 aa3.81□□□□□ -1.8
PTPN1-201ENST00000371621 PRM1P04553 51 aa3.77□□□□□ -1.81
PTPN1-201ENST00000371621 LCE2AQ5TA79 106 aaPredicted RBP3.77□□□□□ -1.81
PTPN1-201ENST00000371621 KRTAP4-9Q9BYQ8 210 aa3.76□□□□□ -1.81
PTPN1-201ENST00000371621 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
PTPN1-201ENST00000371621 LCE3DQ9BYE3 92 aa3.74□□□□□ -1.81
PTPN1-201ENST00000371621 MT1LQ93083 61 aa3.73□□□□□ -1.81
PTPN1-201ENST00000371621 SSPOA2VEC9 5147 aa3.69□□□□□ -1.82
PTPN1-201ENST00000371621 LCE3EQ5T5B0 92 aa3.69□□□□□ -1.82
PTPN1-201ENST00000371621 SPRR2FQ96RM1 72 aa3.67□□□□□ -1.82
PTPN1-201ENST00000371621 KRTAP19-4Q3LI73 84 aa3.67□□□□□ -1.82
PTPN1-201ENST00000371621 MUC12Q9UKN1 5478 aa3.67□□□□□ -1.82
PTPN1-201ENST00000371621 MT1EP04732 61 aa3.64□□□□□ -1.83
PTPN1-201ENST00000371621 KRTAP19-7Q3SYF9 63 aa3.63□□□□□ -1.83
PTPN1-201ENST00000371621 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
PTPN1-201ENST00000371621 SYNE2Q8WXH0 6885 aaKnown RBP3.58□□□□□ -1.84
PTPN1-201ENST00000371621 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
PTPN1-201ENST00000371621 KRTAP19-3Q7Z4W3 81 aa3.47□□□□□ -1.85
PTPN1-201ENST00000371621 MT1MQ8N339 61 aa3.46□□□□□ -1.86
PTPN1-201ENST00000371621 KRTAP9-2Q9BYQ4 174 aa3.45□□□□□ -1.86
PTPN1-201ENST00000371621 MACF1Q9UPN3 7388 aaKnown RBP3.42□□□□□ -1.86
PTPN1-201ENST00000371621 KRTAP19-6Q3LI70 58 aa3.42□□□□□ -1.86
PTPN1-201ENST00000371621 MDN1Q9NU22 5596 aa3.34□□□□□ -1.88
PTPN1-201ENST00000371621 KRTAP6-2Q3LI66 62 aa3.32□□□□□ -1.88
PTPN1-201ENST00000371621 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
PTPN1-201ENST00000371621 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
PTPN1-201ENST00000371621 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
PTPN1-201ENST00000371621 KRTAP9-6A0A140TA67 174 aa3.22□□□□□ -1.89
PTPN1-201ENST00000371621 SPRR2EP22531 72 aa3.2□□□□□ -1.9
PTPN1-201ENST00000371621 SPRR2BP35325 72 aa3.2□□□□□ -1.9
PTPN1-201ENST00000371621 SPRR2AP35326 72 aa3.2□□□□□ -1.9
PTPN1-201ENST00000371621 MT1AP04731 61 aa3.15□□□□□ -1.9
PTPN1-201ENST00000371621 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.91
PTPN1-201ENST00000371621 KRTAP6-3Q3LI67 103 aa3.14□□□□□ -1.91
PTPN1-201ENST00000371621 MT3P25713 68 aa3.1□□□□□ -1.91
PTPN1-201ENST00000371621 LCE5AQ5TCM9 118 aa3.09□□□□□ -1.92
PTPN1-201ENST00000371621 SPRR2DP22532 72 aa3.05□□□□□ -1.92
PTPN1-201ENST00000371621 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
PTPN1-201ENST00000371621 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.01□□□□□ -1.93
PTPN1-201ENST00000371621 LCE1DQ5T752 114 aa2.99□□□□□ -1.93
PTPN1-201ENST00000371621 LCE1BQ5T7P3 118 aa2.96□□□□□ -1.94
PTPN1-201ENST00000371621 KRTAP9-4Q9BYQ2 154 aa2.89□□□□□ -1.95
PTPN1-201ENST00000371621 MT4P47944 62 aa2.87□□□□□ -1.95
PTPN1-201ENST00000371621 KRTAP4-11Q9BYQ6 195 aa2.87□□□□□ -1.95
PTPN1-201ENST00000371621 KRTAP5-9P26371 169 aa2.85□□□□□ -1.95
PTPN1-201ENST00000371621 NEBP20929 6669 aa2.66□□□□□ -1.98
PTPN1-201ENST00000371621 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.99
PTPN1-201ENST00000371621 LCE4AQ5TA78 99 aa2.63□□□□□ -1.99
PTPN1-201ENST00000371621 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
PTPN1-201ENST00000371621 KRTAP4-6Q9BYQ5 205 aa2.58□□□□□ -2
PTPN1-201ENST00000371621 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
PTPN1-201ENST00000371621 MUC5ACP98088 5654 aa2.45□□□□□ -2.02
PTPN1-201ENST00000371621 KRTAP20-2Q3LI61 65 aa2.41□□□□□ -2.02
PTPN1-201ENST00000371621 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
PTPN1-201ENST00000371621 KRTAP5-4Q6L8H1 288 aa2.39□□□□□ -2.03
PTPN1-201ENST00000371621 KRTAP9-9Q9BYP9 154 aa2.3□□□□□ -2.04
PTPN1-201ENST00000371621 GPR98Q8WXG9 6306 aa2.21□□□□□ -2.06
PTPN1-201ENST00000371621 KRTAP5-2Q701N4 177 aa2.19□□□□□ -2.06
PTPN1-201ENST00000371621 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
PTPN1-201ENST00000371621 KRTAP5-3Q6L8H2 238 aa2.17□□□□□ -2.06
PTPN1-201ENST00000371621 KRTAP5-10Q6L8G5 202 aa2.17□□□□□ -2.06
PTPN1-201ENST00000371621 KRTAP4-12Q9BQ66 201 aa2.13□□□□□ -2.07
PTPN1-201ENST00000371621 KRTAP4-2Q9BYR5 136 aa2.11□□□□□ -2.07
PTPN1-201ENST00000371621 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
PTPN1-201ENST00000371621 AHNAK2Q8IVF2 5795 aa2.06□□□□□ -2.08
PTPN1-201ENST00000371621 KRTAP5-1Q6L8H4 278 aa1.94□□□□□ -2.1
PTPN1-201ENST00000371621 KRTAP5-7Q6L8G8 165 aa1.89□□□□□ -2.11
PTPN1-201ENST00000371621 KRTAP5-8O75690 187 aa1.88□□□□□ -2.11
PTPN1-201ENST00000371621 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
PTPN1-201ENST00000371621 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.81□□□□□ -2.12
PTPN1-201ENST00000371621 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
PTPN1-201ENST00000371621 KRTAP5-11Q6L8G4 156 aa1.65□□□□□ -2.14
PTPN1-201ENST00000371621 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
PTPN1-201ENST00000371621 PHGR1C9JFL3 82 aa1.45□□□□□ -2.18
PTPN1-201ENST00000371621 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 9.3 ms