RNA–Protein interactions for RNA: ENST00000361138.6

SMC5-201, Transcript of structural maintenance of chromosomes 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC5, Length 5,980 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-201ENST00000361138 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
SMC5-201ENST00000361138 HMCN2Q8NDA2 5059 aa4.38□□□□□ -1.71
SMC5-201ENST00000361138 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
SMC5-201ENST00000361138 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
SMC5-201ENST00000361138 KRTAP2-1Q9BYU5 128 aa4.38□□□□□ -1.71
SMC5-201ENST00000361138 KRTAP19-6Q3LI70 58 aa4.36□□□□□ -1.71
SMC5-201ENST00000361138 LOC100996750A0A140TA64 210 aa4.35□□□□□ -1.71
SMC5-201ENST00000361138 KRTAP9-6A0A140TA67 174 aa4.33□□□□□ -1.72
SMC5-201ENST00000361138 UBR4Q5T4S7 5183 aa4.31□□□□□ -1.72
SMC5-201ENST00000361138 PRM1P04553 51 aa4.3□□□□□ -1.72
SMC5-201ENST00000361138 MT1MQ8N339 61 aa4.29□□□□□ -1.72
SMC5-201ENST00000361138 KRTAP19-7Q3SYF9 63 aa4.24□□□□□ -1.73
SMC5-201ENST00000361138 KRTAP4-3Q9BYR4 195 aa4.24□□□□□ -1.73
SMC5-201ENST00000361138 KRTAP9-6A8MVA2 160 aa4.16□□□□□ -1.74
SMC5-201ENST00000361138 FSIP2Q5CZC0 6907 aa4.16□□□□□ -1.74
SMC5-201ENST00000361138 MUC2Q02817 5179 aa4.14□□□□□ -1.75
SMC5-201ENST00000361138 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
SMC5-201ENST00000361138 MT3P25713 68 aa4.04□□□□□ -1.76
SMC5-201ENST00000361138 KRTAP9-7A8MTY7 169 aa4.02□□□□□ -1.77
SMC5-201ENST00000361138 MT4P47944 62 aa4.01□□□□□ -1.77
SMC5-201ENST00000361138 MT1AP04731 61 aa3.99□□□□□ -1.77
SMC5-201ENST00000361138 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.97□□□□□ -1.77
SMC5-201ENST00000361138 KRTAP6-3Q3LI67 103 aa3.92□□□□□ -1.78
SMC5-201ENST00000361138 KRTAP20-1Q3LI63 56 aa3.9□□□□□ -1.78
SMC5-201ENST00000361138 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
SMC5-201ENST00000361138 KRTAP6-2Q3LI66 62 aa3.84□□□□□ -1.8
SMC5-201ENST00000361138 SYNE2Q8WXH0 6885 aaKnown RBP3.79□□□□□ -1.8
SMC5-201ENST00000361138 LCE1AQ5T7P2 110 aa3.74□□□□□ -1.81
SMC5-201ENST00000361138 LCE5AQ5TCM9 118 aa3.73□□□□□ -1.81
SMC5-201ENST00000361138 KRTAP9-4Q9BYQ2 154 aa3.72□□□□□ -1.81
SMC5-201ENST00000361138 LCE1DQ5T752 114 aa3.69□□□□□ -1.82
SMC5-201ENST00000361138 LCE1BQ5T7P3 118 aa3.68□□□□□ -1.82
SMC5-201ENST00000361138 USH2AO75445 5202 aa3.68□□□□□ -1.82
SMC5-201ENST00000361138 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
SMC5-201ENST00000361138 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
SMC5-201ENST00000361138 MACF1Q9UPN3 7388 aaKnown RBP3.52□□□□□ -1.85
SMC5-201ENST00000361138 KMT2DO14686 5537 aa3.5□□□□□ -1.85
SMC5-201ENST00000361138 SYNE1Q8NF91 8797 aaKnown RBP3.46□□□□□ -1.86
SMC5-201ENST00000361138 KRTAP5-9P26371 169 aa3.46□□□□□ -1.86
SMC5-201ENST00000361138 SSPOA2VEC9 5147 aa3.43□□□□□ -1.86
SMC5-201ENST00000361138 FCGBPQ9Y6R7 5405 aaPredicted RBP3.42□□□□□ -1.86
SMC5-201ENST00000361138 NEBP20929 6669 aa3.35□□□□□ -1.87
SMC5-201ENST00000361138 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
SMC5-201ENST00000361138 KRTAP5-5Q701N2 237 aaPredicted RBP3.25□□□□□ -1.89
SMC5-201ENST00000361138 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
SMC5-201ENST00000361138 MUC12Q9UKN1 5478 aa3.17□□□□□ -1.9
SMC5-201ENST00000361138 KRTAP4-11Q9BYQ6 195 aa3.15□□□□□ -1.9
SMC5-201ENST00000361138 DSTQ03001 7570 aaKnown RBP3.11□□□□□ -1.91
SMC5-201ENST00000361138 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.92
SMC5-201ENST00000361138 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
SMC5-201ENST00000361138 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
SMC5-201ENST00000361138 LCE1EQ5T753 118 aa2.98□□□□□ -1.93
SMC5-201ENST00000361138 LCE1FQ5T754 118 aa2.98□□□□□ -1.93
SMC5-201ENST00000361138 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
SMC5-201ENST00000361138 MDN1Q9NU22 5596 aa2.89□□□□□ -1.95
SMC5-201ENST00000361138 KRTAP4-4Q9BYR3 166 aa2.7□□□□□ -1.98
SMC5-201ENST00000361138 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.99
SMC5-201ENST00000361138 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
SMC5-201ENST00000361138 KRTAP5-3Q6L8H2 238 aa2.62□□□□□ -1.99
SMC5-201ENST00000361138 GPR98Q8WXG9 6306 aa2.49□□□□□ -2.01
SMC5-201ENST00000361138 KRTAP5-10Q6L8G5 202 aa2.46□□□□□ -2.02
SMC5-201ENST00000361138 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
SMC5-201ENST00000361138 KRTAP5-2Q701N4 177 aa2.39□□□□□ -2.03
SMC5-201ENST00000361138 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
SMC5-201ENST00000361138 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
SMC5-201ENST00000361138 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
SMC5-201ENST00000361138 AHNAK2Q8IVF2 5795 aa2.21□□□□□ -2.05
SMC5-201ENST00000361138 KRTAP5-1Q6L8H4 278 aa2.13□□□□□ -2.07
SMC5-201ENST00000361138 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
SMC5-201ENST00000361138 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
SMC5-201ENST00000361138 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
SMC5-201ENST00000361138 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
SMC5-201ENST00000361138 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
SMC5-201ENST00000361138 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
SMC5-201ENST00000361138 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
SMC5-201ENST00000361138 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
SMC5-201ENST00000361138 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 58.3 ms