RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LCE2AQ5TA79 106 aaPredicted RBP6.28□□□□□ -1.4
CCDC88B-202ENST00000356786 MT1EP04732 61 aa6.21□□□□□ -1.42
CCDC88B-202ENST00000356786 SPRR2DP22532 72 aa6.21□□□□□ -1.42
CCDC88B-202ENST00000356786 KRTAP19-3Q7Z4W3 81 aa6.21□□□□□ -1.42
CCDC88B-202ENST00000356786 KRTAP19-6Q3LI70 58 aa6.11□□□□□ -1.43
CCDC88B-202ENST00000356786 PRM1P04553 51 aa6.04□□□□□ -1.44
CCDC88B-202ENST00000356786 LOC100996750A0A140TA64 210 aa6.02□□□□□ -1.45
CCDC88B-202ENST00000356786 MT1MQ8N339 61 aa5.99□□□□□ -1.45
CCDC88B-202ENST00000356786 KRTAP4-3Q9BYR4 195 aa5.94□□□□□ -1.46
CCDC88B-202ENST00000356786 KRTAP9-2Q9BYQ4 174 aa5.93□□□□□ -1.46
CCDC88B-202ENST00000356786 LCE2DQ5TA82 110 aaPredicted RBP5.89□□□□□ -1.47
CCDC88B-202ENST00000356786 KRTAP19-7Q3SYF9 63 aa5.89□□□□□ -1.47
CCDC88B-202ENST00000356786 KRTAP2-3P0C7H8 128 aa5.87□□□□□ -1.47
CCDC88B-202ENST00000356786 KRTAP2-4Q9BYR9 128 aa5.87□□□□□ -1.47
CCDC88B-202ENST00000356786 KRTAP2-1Q9BYU5 128 aa5.87□□□□□ -1.47
CCDC88B-202ENST00000356786 MT3P25713 68 aa5.82□□□□□ -1.48
CCDC88B-202ENST00000356786 OBSCNQ5VST9 7968 aa5.77□□□□□ -1.49
CCDC88B-202ENST00000356786 KRTAP4-9Q9BYQ8 210 aa5.73□□□□□ -1.49
CCDC88B-202ENST00000356786 KRTAP9-6A8MVA2 160 aa5.67□□□□□ -1.5
CCDC88B-202ENST00000356786 USH2AO75445 5202 aa5.6□□□□□ -1.51
CCDC88B-202ENST00000356786 MT1AP04731 61 aa5.58□□□□□ -1.52
CCDC88B-202ENST00000356786 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
CCDC88B-202ENST00000356786 MT4P47944 62 aa5.49□□□□□ -1.53
CCDC88B-202ENST00000356786 KRTAP9-6A0A140TA67 174 aa5.47□□□□□ -1.53
CCDC88B-202ENST00000356786 LCE1DQ5T752 114 aa5.47□□□□□ -1.53
CCDC88B-202ENST00000356786 FCGBPQ9Y6R7 5405 aaPredicted RBP5.44□□□□□ -1.54
CCDC88B-202ENST00000356786 KMT2DO14686 5537 aa5.4□□□□□ -1.55
CCDC88B-202ENST00000356786 SYNE2Q8WXH0 6885 aaKnown RBP5.39□□□□□ -1.55
CCDC88B-202ENST00000356786 LCE5AQ5TCM9 118 aa5.34□□□□□ -1.55
CCDC88B-202ENST00000356786 KRTAP6-2Q3LI66 62 aa5.33□□□□□ -1.56
CCDC88B-202ENST00000356786 KRTAP6-1Q3LI64 71 aa5.32□□□□□ -1.56
CCDC88B-202ENST00000356786 LCE1AQ5T7P2 110 aa5.27□□□□□ -1.57
CCDC88B-202ENST00000356786 DSTQ03001 7570 aaKnown RBP5.26□□□□□ -1.57
CCDC88B-202ENST00000356786 KRTAP9-7A8MTY7 169 aa5.25□□□□□ -1.57
CCDC88B-202ENST00000356786 KRTAP6-3Q3LI67 103 aa5.24□□□□□ -1.57
CCDC88B-202ENST00000356786 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.2□□□□□ -1.58
CCDC88B-202ENST00000356786 SSPOA2VEC9 5147 aa5.17□□□□□ -1.58
CCDC88B-202ENST00000356786 MACF1Q9UPN3 7388 aaKnown RBP5.1□□□□□ -1.59
CCDC88B-202ENST00000356786 KRTAP20-1Q3LI63 56 aa5.1□□□□□ -1.59
CCDC88B-202ENST00000356786 KRTAP9-4Q9BYQ2 154 aa5.09□□□□□ -1.6
CCDC88B-202ENST00000356786 MUC12Q9UKN1 5478 aa5.06□□□□□ -1.6
CCDC88B-202ENST00000356786 LCE4AQ5TA78 99 aa4.92□□□□□ -1.62
CCDC88B-202ENST00000356786 MUC19Q7Z5P9 8384 aa4.89□□□□□ -1.63
CCDC88B-202ENST00000356786 KRTAP5-9P26371 169 aa4.85□□□□□ -1.63
CCDC88B-202ENST00000356786 KRTAP2-2Q9BYT5 123 aa4.85□□□□□ -1.63
CCDC88B-202ENST00000356786 MDN1Q9NU22 5596 aa4.58□□□□□ -1.68
CCDC88B-202ENST00000356786 NEBP20929 6669 aa4.53□□□□□ -1.68
CCDC88B-202ENST00000356786 LCE1CQ5T751 118 aa4.49□□□□□ -1.69
CCDC88B-202ENST00000356786 LCE1EQ5T753 118 aa4.49□□□□□ -1.69
CCDC88B-202ENST00000356786 LCE1FQ5T754 118 aa4.49□□□□□ -1.69
CCDC88B-202ENST00000356786 KRTAP4-11Q9BYQ6 195 aa4.47□□□□□ -1.69
CCDC88B-202ENST00000356786 KRTAP4-6Q9BYQ5 205 aa4.42□□□□□ -1.7
CCDC88B-202ENST00000356786 KRTAP20-2Q3LI61 65 aa4.31□□□□□ -1.72
CCDC88B-202ENST00000356786 KRTAP5-5Q701N2 237 aaPredicted RBP4.26□□□□□ -1.73
CCDC88B-202ENST00000356786 KRTAP9-9Q9BYP9 154 aa4.22□□□□□ -1.73
CCDC88B-202ENST00000356786 GPR98Q8WXG9 6306 aa4.08□□□□□ -1.76
CCDC88B-202ENST00000356786 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
CCDC88B-202ENST00000356786 KRTAP4-4Q9BYR3 166 aa3.95□□□□□ -1.78
CCDC88B-202ENST00000356786 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
CCDC88B-202ENST00000356786 KRTAP4-12Q9BQ66 201 aa3.73□□□□□ -1.81
CCDC88B-202ENST00000356786 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
CCDC88B-202ENST00000356786 HMCN1Q96RW7 5635 aa3.65□□□□□ -1.83
CCDC88B-202ENST00000356786 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
CCDC88B-202ENST00000356786 KRTAP5-2Q701N4 177 aa3.49□□□□□ -1.85
CCDC88B-202ENST00000356786 AHNAK2Q8IVF2 5795 aa3.35□□□□□ -1.87
CCDC88B-202ENST00000356786 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
CCDC88B-202ENST00000356786 KRTAP5-8O75690 187 aa3.29□□□□□ -1.88
CCDC88B-202ENST00000356786 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
CCDC88B-202ENST00000356786 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
CCDC88B-202ENST00000356786 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
CCDC88B-202ENST00000356786 KRTAP21-2Q3LI59 83 aa2.87□□□□□ -1.95
CCDC88B-202ENST00000356786 AHNAKQ09666 5890 aaKnown RBP2.84□□□□□ -1.96
CCDC88B-202ENST00000356786 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.75□□□□□ -1.97
CCDC88B-202ENST00000356786 PHGR1C9JFL3 82 aa2.71□□□□□ -1.98
CCDC88B-202ENST00000356786 KRTAP21-1Q3LI58 79 aa2.69□□□□□ -1.98
CCDC88B-202ENST00000356786 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
CCDC88B-202ENST00000356786 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 11.8 ms