RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 P0C880 135 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 LCE1CQ5T751 118 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 LCE1BQ5T7P3 118 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-7Q6L8G8 165 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 CRIPTQ9P021 101 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 A0A1B0GU33 70 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 MT1HP80294 61 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 SPRR5A0A1B0GTR4 108 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 M0R2T5 61 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 SPINT4Q6UDR6 99 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 CDC42SE1Q9NRR8 79 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 S4R3F8 94 aa1.05□□□□□ -2.24
VPS54-202ENST00000354504 CSAG1Q6PB30 78 aa1.05□□□□□ -2.24
VPS54-202ENST00000354504 AHNAK2Q8IVF2 5795 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP12-1P59990 96 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 KTN1-AS1Q86SY8 53 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 H1FX-AS1Q4G0G2 97 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 MT1FP04733 61 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 SPRR2GQ9BYE4 73 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 R4GN34 69 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 M0QZ58 72 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 MT2AP02795 61 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 MT1BP07438 61 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP19-8Q3LI54 63 aa1.01□□□□□ -2.25
VPS54-202ENST00000354504 C10orf95Q9H7T3 257 aa1□□□□□ -2.25
VPS54-202ENST00000354504 MT1XP80297 61 aa0.99□□□□□ -2.25
VPS54-202ENST00000354504 OBSCNQ5VST9 7968 aa0.99□□□□□ -2.25
VPS54-202ENST00000354504 FCGBPQ9Y6R7 5405 aaPredicted RBP0.98□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP20-1Q3LI63 56 aa0.97□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP10-10P60014 251 aa0.97□□□□□ -2.25
VPS54-202ENST00000354504 ROMO1P60602 79 aa0.96□□□□□ -2.26
VPS54-202ENST00000354504 LCE3AQ5TA76 89 aa0.95□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP25-1Q3LHN0 102 aa0.95□□□□□ -2.26
VPS54-202ENST00000354504 PLAC4Q8WY50 150 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 MUC12Q9UKN1 5478 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP6-3Q3LI67 103 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 MUC5ACP98088 5654 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 DSTQ03001 7570 aaKnown RBP0.92□□□□□ -2.26
VPS54-202ENST00000354504 MDN1Q9NU22 5596 aa0.92□□□□□ -2.26
VPS54-202ENST00000354504 PRO2289Q9P1D8 64 aa0.91□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP19-7Q3SYF9 63 aa0.91□□□□□ -2.26
VPS54-202ENST00000354504 TNP1P09430 55 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 MACF1Q9UPN3 7388 aaKnown RBP0.9□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP19-6Q3LI70 58 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP8-1Q8IUC2 63 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 SYNE1Q8NF91 8797 aaKnown RBP0.89□□□□□ -2.27
VPS54-202ENST00000354504 SYNE2Q8WXH0 6885 aaKnown RBP0.87□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP5-10Q6L8G5 202 aa0.87□□□□□ -2.27
VPS54-202ENST00000354504 PP632Q6XCG6 107 aa0.86□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP2-3P0C7H8 128 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP2-4Q9BYR9 128 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 MT1EP04732 61 aa0.84□□□□□ -2.28
VPS54-202ENST00000354504 MT1LQ93083 61 aa0.82□□□□□ -2.28
VPS54-202ENST00000354504 KRTAP12-3P60328 96 aa0.81□□□□□ -2.28
VPS54-202ENST00000354504 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
VPS54-202ENST00000354504 INE1O15225 51 aa0.8□□□□□ -2.28
VPS54-202ENST00000354504 MUC19Q7Z5P9 8384 aa0.77□□□□□ -2.29
VPS54-202ENST00000354504 MT1MQ8N339 61 aa0.77□□□□□ -2.29
VPS54-202ENST00000354504 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
VPS54-202ENST00000354504 KRTAP19-3Q7Z4W3 81 aa0.75□□□□□ -2.29
VPS54-202ENST00000354504 MT1GP13640 62 aa0.72□□□□□ -2.29
VPS54-202ENST00000354504 KRTAP6-1Q3LI64 71 aa0.71□□□□□ -2.3
VPS54-202ENST00000354504 KRTAP21-2Q3LI59 83 aa0.7□□□□□ -2.3
VPS54-202ENST00000354504 KRTAP12-4P60329 112 aa0.69□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2EP22531 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2BP35325 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2AP35326 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 MT1AP04731 61 aa0.67□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2DP22532 72 aa0.65□□□□□ -2.31
VPS54-202ENST00000354504 MT4P47944 62 aa0.62□□□□□ -2.31
VPS54-202ENST00000354504 KRTAP20-2Q3LI61 65 aa0.61□□□□□ -2.31
VPS54-202ENST00000354504 KRTAP6-2Q3LI66 62 aa0.6□□□□□ -2.31
VPS54-202ENST00000354504 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
VPS54-202ENST00000354504 PRM1P04553 51 aa0.53□□□□□ -2.32
VPS54-202ENST00000354504 KRTAP21-1Q3LI58 79 aa0.5□□□□□ -2.33
VPS54-202ENST00000354504 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 7.6 ms