RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 P0C880 135 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 LCE1CQ5T751 118 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 LCE1BQ5T7P3 118 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP5-7Q6L8G8 165 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 CRIPTQ9P021 101 aa1.07□□□□□ -2.24
VPS54-202ENST00000354504 A0A1B0GU33 70 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 MT1HP80294 61 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 SPRR5A0A1B0GTR4 108 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 M0R2T5 61 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 SPINT4Q6UDR6 99 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 CDC42SE1Q9NRR8 79 aa1.06□□□□□ -2.24
VPS54-202ENST00000354504 S4R3F8 94 aa1.05□□□□□ -2.24
VPS54-202ENST00000354504 CSAG1Q6PB30 78 aa1.05□□□□□ -2.24
VPS54-202ENST00000354504 AHNAK2Q8IVF2 5795 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 KRTAP12-1P59990 96 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 KTN1-AS1Q86SY8 53 aa1.04□□□□□ -2.24
VPS54-202ENST00000354504 H1FX-AS1Q4G0G2 97 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 MT1FP04733 61 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 SPRR2GQ9BYE4 73 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 R4GN34 69 aa1.03□□□□□ -2.24
VPS54-202ENST00000354504 M0QZ58 72 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 MT2AP02795 61 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 MT1BP07438 61 aa1.02□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP19-8Q3LI54 63 aa1.01□□□□□ -2.25
VPS54-202ENST00000354504 C10orf95Q9H7T3 257 aa1□□□□□ -2.25
VPS54-202ENST00000354504 MT1XP80297 61 aa0.99□□□□□ -2.25
VPS54-202ENST00000354504 OBSCNQ5VST9 7968 aa0.99□□□□□ -2.25
VPS54-202ENST00000354504 FCGBPQ9Y6R7 5405 aaPredicted RBP0.98□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP20-1Q3LI63 56 aa0.97□□□□□ -2.25
VPS54-202ENST00000354504 KRTAP10-10P60014 251 aa0.97□□□□□ -2.25
VPS54-202ENST00000354504 ROMO1P60602 79 aa0.96□□□□□ -2.26
VPS54-202ENST00000354504 LCE3AQ5TA76 89 aa0.95□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP25-1Q3LHN0 102 aa0.95□□□□□ -2.26
VPS54-202ENST00000354504 PLAC4Q8WY50 150 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 MUC12Q9UKN1 5478 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP6-3Q3LI67 103 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 MUC5ACP98088 5654 aa0.93□□□□□ -2.26
VPS54-202ENST00000354504 DSTQ03001 7570 aaKnown RBP0.92□□□□□ -2.26
VPS54-202ENST00000354504 MDN1Q9NU22 5596 aa0.92□□□□□ -2.26
VPS54-202ENST00000354504 PRO2289Q9P1D8 64 aa0.91□□□□□ -2.26
VPS54-202ENST00000354504 KRTAP19-7Q3SYF9 63 aa0.91□□□□□ -2.26
VPS54-202ENST00000354504 TNP1P09430 55 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 MACF1Q9UPN3 7388 aaKnown RBP0.9□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP19-6Q3LI70 58 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP8-1Q8IUC2 63 aa0.9□□□□□ -2.27
VPS54-202ENST00000354504 SYNE1Q8NF91 8797 aaKnown RBP0.89□□□□□ -2.27
VPS54-202ENST00000354504 SYNE2Q8WXH0 6885 aaKnown RBP0.87□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP5-10Q6L8G5 202 aa0.87□□□□□ -2.27
VPS54-202ENST00000354504 PP632Q6XCG6 107 aa0.86□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP2-3P0C7H8 128 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP2-4Q9BYR9 128 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 KRTAP19-5Q3LI72 72 aa0.85□□□□□ -2.27
VPS54-202ENST00000354504 MT1EP04732 61 aa0.84□□□□□ -2.28
VPS54-202ENST00000354504 MT1LQ93083 61 aa0.82□□□□□ -2.28
VPS54-202ENST00000354504 KRTAP12-3P60328 96 aa0.81□□□□□ -2.28
VPS54-202ENST00000354504 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
VPS54-202ENST00000354504 INE1O15225 51 aa0.8□□□□□ -2.28
VPS54-202ENST00000354504 MUC19Q7Z5P9 8384 aa0.77□□□□□ -2.29
VPS54-202ENST00000354504 MT1MQ8N339 61 aa0.77□□□□□ -2.29
VPS54-202ENST00000354504 SPRR2FQ96RM1 72 aa0.76□□□□□ -2.29
VPS54-202ENST00000354504 KRTAP19-3Q7Z4W3 81 aa0.75□□□□□ -2.29
VPS54-202ENST00000354504 MT1GP13640 62 aa0.72□□□□□ -2.29
VPS54-202ENST00000354504 KRTAP6-1Q3LI64 71 aa0.71□□□□□ -2.3
VPS54-202ENST00000354504 KRTAP21-2Q3LI59 83 aa0.7□□□□□ -2.3
VPS54-202ENST00000354504 KRTAP12-4P60329 112 aa0.69□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2EP22531 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2BP35325 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2AP35326 72 aa0.68□□□□□ -2.3
VPS54-202ENST00000354504 MT1AP04731 61 aa0.67□□□□□ -2.3
VPS54-202ENST00000354504 SPRR2DP22532 72 aa0.65□□□□□ -2.31
VPS54-202ENST00000354504 MT4P47944 62 aa0.62□□□□□ -2.31
VPS54-202ENST00000354504 KRTAP20-2Q3LI61 65 aa0.61□□□□□ -2.31
VPS54-202ENST00000354504 KRTAP6-2Q3LI66 62 aa0.6□□□□□ -2.31
VPS54-202ENST00000354504 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
VPS54-202ENST00000354504 PRM1P04553 51 aa0.53□□□□□ -2.32
VPS54-202ENST00000354504 KRTAP21-1Q3LI58 79 aa0.5□□□□□ -2.33
VPS54-202ENST00000354504 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms