RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 DSTQ03001 7570 aaKnown RBP3.63□□□□□ -1.83
CD44-205ENST00000352818 SPRR2FQ96RM1 72 aa3.62□□□□□ -1.83
CD44-205ENST00000352818 SPRR2DP22532 72 aa3.6□□□□□ -1.83
CD44-205ENST00000352818 SPRR2GQ9BYE4 73 aa3.6□□□□□ -1.83
CD44-205ENST00000352818 LCE4AQ5TA78 99 aa3.59□□□□□ -1.83
CD44-205ENST00000352818 AHNAK2Q8IVF2 5795 aa3.59□□□□□ -1.84
CD44-205ENST00000352818 KRTAP10-5P60370 271 aa3.57□□□□□ -1.84
CD44-205ENST00000352818 KRTAP4-9Q9BYQ8 210 aa3.57□□□□□ -1.84
CD44-205ENST00000352818 KRTAP4-7Q9BYR0 210 aa3.57□□□□□ -1.84
CD44-205ENST00000352818 MT1BP07438 61 aa3.56□□□□□ -1.84
CD44-205ENST00000352818 HMCN1Q96RW7 5635 aa3.55□□□□□ -1.84
CD44-205ENST00000352818 C10orf95Q9H7T3 257 aa3.53□□□□□ -1.84
CD44-205ENST00000352818 KRTAP5-10Q6L8G5 202 aa3.52□□□□□ -1.85
CD44-205ENST00000352818 CAMK2N1Q7Z7J9 78 aa3.52□□□□□ -1.85
CD44-205ENST00000352818 KRTAP19-8Q3LI54 63 aa3.49□□□□□ -1.85
CD44-205ENST00000352818 PLAC4Q8WY50 150 aa3.46□□□□□ -1.86
CD44-205ENST00000352818 KRTAP5-7Q6L8G8 165 aa3.45□□□□□ -1.86
CD44-205ENST00000352818 PP632Q6XCG6 107 aa3.43□□□□□ -1.86
CD44-205ENST00000352818 LCE5AQ5TCM9 118 aa3.41□□□□□ -1.86
CD44-205ENST00000352818 KRTAP4-2Q9BYR5 136 aa3.41□□□□□ -1.86
CD44-205ENST00000352818 TNP1P09430 55 aa3.4□□□□□ -1.87
CD44-205ENST00000352818 KRTAP4-11Q9BYQ6 195 aa3.4□□□□□ -1.87
CD44-205ENST00000352818 KRTAP8-1Q8IUC2 63 aa3.37□□□□□ -1.87
CD44-205ENST00000352818 SPRR5A0A1B0GTR4 108 aa3.35□□□□□ -1.87
CD44-205ENST00000352818 MT1XP80297 61 aa3.32□□□□□ -1.88
CD44-205ENST00000352818 NDUFAF8A1L188 74 aa3.31□□□□□ -1.88
CD44-205ENST00000352818 KRTAP15-1Q3LI76 137 aa3.3□□□□□ -1.88
CD44-205ENST00000352818 PRO2289Q9P1D8 64 aa3.28□□□□□ -1.88
CD44-205ENST00000352818 KRTAP5-3Q6L8H2 238 aa3.25□□□□□ -1.89
CD44-205ENST00000352818 MT4P47944 62 aa3.23□□□□□ -1.89
CD44-205ENST00000352818 LUZP6Q538Z0 58 aa3.22□□□□□ -1.89
CD44-205ENST00000352818 LCE3AQ5TA76 89 aa3.22□□□□□ -1.89
CD44-205ENST00000352818 KRTAP10-12P60413 245 aa3.2□□□□□ -1.9
CD44-205ENST00000352818 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
CD44-205ENST00000352818 KRTAP10-7P60409 375 aaPredicted RBP3.17□□□□□ -1.9
CD44-205ENST00000352818 KRTAP12-3P60328 96 aa3.09□□□□□ -1.91
CD44-205ENST00000352818 MUC5ACP98088 5654 aa3.09□□□□□ -1.92
CD44-205ENST00000352818 MUC5BQ9HC84 5762 aaPredicted RBP3.05□□□□□ -1.92
CD44-205ENST00000352818 KRTAP5-4Q6L8H1 288 aa3.03□□□□□ -1.92
CD44-205ENST00000352818 KRTAP19-5Q3LI72 72 aa3.01□□□□□ -1.93
CD44-205ENST00000352818 KRTAP19-7Q3SYF9 63 aa2.96□□□□□ -1.94
CD44-205ENST00000352818 MT1EP04732 61 aa2.91□□□□□ -1.94
CD44-205ENST00000352818 LCE3CQ5T5A8 94 aa2.91□□□□□ -1.94
CD44-205ENST00000352818 KRTAP19-3Q7Z4W3 81 aa2.91□□□□□ -1.94
CD44-205ENST00000352818 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
CD44-205ENST00000352818 MT1LQ93083 61 aa2.88□□□□□ -1.95
CD44-205ENST00000352818 INE1O15225 51 aa2.82□□□□□ -1.96
CD44-205ENST00000352818 KRTAP5-8O75690 187 aa2.8□□□□□ -1.96
CD44-205ENST00000352818 KRTAP4-3Q9BYR4 195 aa2.77□□□□□ -1.97
CD44-205ENST00000352818 MT1GP13640 62 aa2.76□□□□□ -1.97
CD44-205ENST00000352818 KRTAP9-6A8MVA2 160 aa2.74□□□□□ -1.97
CD44-205ENST00000352818 MT1MQ8N339 61 aa2.74□□□□□ -1.97
CD44-205ENST00000352818 SYNE1Q8NF91 8797 aaKnown RBP2.67□□□□□ -1.98
CD44-205ENST00000352818 KRTAP5-2Q701N4 177 aa2.63□□□□□ -1.99
CD44-205ENST00000352818 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
CD44-205ENST00000352818 KRTAP12-4P60329 112 aa2.59□□□□□ -1.99
CD44-205ENST00000352818 OBSCNQ5VST9 7968 aa2.53□□□□□ -2
CD44-205ENST00000352818 MT3P25713 68 aa2.47□□□□□ -2.01
CD44-205ENST00000352818 MT1AP04731 61 aa2.45□□□□□ -2.02
CD44-205ENST00000352818 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
CD44-205ENST00000352818 KRTAP6-1Q3LI64 71 aa2.4□□□□□ -2.03
CD44-205ENST00000352818 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
CD44-205ENST00000352818 KRTAP5-11Q6L8G4 156 aa2.28□□□□□ -2.04
CD44-205ENST00000352818 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
CD44-205ENST00000352818 KRTAP6-2Q3LI66 62 aa2.26□□□□□ -2.05
CD44-205ENST00000352818 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
CD44-205ENST00000352818 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
CD44-205ENST00000352818 LCE3EQ5T5B0 92 aa2.16□□□□□ -2.06
CD44-205ENST00000352818 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
CD44-205ENST00000352818 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
CD44-205ENST00000352818 PRM1P04553 51 aa1.93□□□□□ -2.1
CD44-205ENST00000352818 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
CD44-205ENST00000352818 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
CD44-205ENST00000352818 MUC19Q7Z5P9 8384 aa1.63□□□□□ -2.15
CD44-205ENST00000352818 KRTAP21-2Q3LI59 83 aa1.57□□□□□ -2.16
CD44-205ENST00000352818 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
CD44-205ENST00000352818 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 239.1 ms