RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 MT3P25713 68 aa5.35□□□□□ -1.55
SMC4-201ENST00000344722 KRTAP4-3Q9BYR4 195 aa5.35□□□□□ -1.55
SMC4-201ENST00000344722 BIRC6Q9NR09 4857 aa5.28□□□□□ -1.56
SMC4-201ENST00000344722 KRTAP9-6A8MVA2 160 aa5.23□□□□□ -1.57
SMC4-201ENST00000344722 KRTAP19-6Q3LI70 58 aa5.23□□□□□ -1.57
SMC4-201ENST00000344722 MT1AP04731 61 aa5.2□□□□□ -1.58
SMC4-201ENST00000344722 HMCN2Q8NDA2 5059 aa5.17□□□□□ -1.58
SMC4-201ENST00000344722 KRTAP4-9Q9BYQ8 210 aa5.16□□□□□ -1.58
SMC4-201ENST00000344722 ABCA13Q86UQ4 5058 aa5.14□□□□□ -1.59
SMC4-201ENST00000344722 LCE2DQ5TA82 110 aaPredicted RBP5.02□□□□□ -1.61
SMC4-201ENST00000344722 SYNE1Q8NF91 8797 aaKnown RBP5□□□□□ -1.61
SMC4-201ENST00000344722 FAT4Q6V0I7 4981 aa4.98□□□□□ -1.61
SMC4-201ENST00000344722 EPPK1P58107 5090 aaKnown RBP4.97□□□□□ -1.61
SMC4-201ENST00000344722 RNF213Q63HN8 5207 aa4.96□□□□□ -1.62
SMC4-201ENST00000344722 KRTAP6-2Q3LI66 62 aa4.96□□□□□ -1.62
SMC4-201ENST00000344722 UBR4Q5T4S7 5183 aa4.93□□□□□ -1.62
SMC4-201ENST00000344722 KRTAP6-1Q3LI64 71 aa4.89□□□□□ -1.63
SMC4-201ENST00000344722 LCE1BQ5T7P3 118 aa4.86□□□□□ -1.63
SMC4-201ENST00000344722 LCE2AQ5TA79 106 aaPredicted RBP4.86□□□□□ -1.63
SMC4-201ENST00000344722 LCE1DQ5T752 114 aa4.86□□□□□ -1.63
SMC4-201ENST00000344722 KRTAP9-7A8MTY7 169 aa4.85□□□□□ -1.63
SMC4-201ENST00000344722 MT4P47944 62 aa4.84□□□□□ -1.63
SMC4-201ENST00000344722 KRTAP9-2Q9BYQ4 174 aa4.8□□□□□ -1.64
SMC4-201ENST00000344722 KRTAP9-4Q9BYQ2 154 aa4.77□□□□□ -1.65
SMC4-201ENST00000344722 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
SMC4-201ENST00000344722 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
SMC4-201ENST00000344722 OBSCNQ5VST9 7968 aa4.56□□□□□ -1.68
SMC4-201ENST00000344722 KRTAP2-2Q9BYT5 123 aa4.55□□□□□ -1.68
SMC4-201ENST00000344722 MUC2Q02817 5179 aa4.52□□□□□ -1.69
SMC4-201ENST00000344722 SYNE2Q8WXH0 6885 aaKnown RBP4.5□□□□□ -1.69
SMC4-201ENST00000344722 FSIP2Q5CZC0 6907 aa4.39□□□□□ -1.71
SMC4-201ENST00000344722 KRTAP6-3Q3LI67 103 aa4.32□□□□□ -1.72
SMC4-201ENST00000344722 KRTAP9-6A0A140TA67 174 aa4.31□□□□□ -1.72
SMC4-201ENST00000344722 LCE4AQ5TA78 99 aa4.29□□□□□ -1.72
SMC4-201ENST00000344722 FCGBPQ9Y6R7 5405 aaPredicted RBP4.25□□□□□ -1.73
SMC4-201ENST00000344722 USH2AO75445 5202 aa4.23□□□□□ -1.73
SMC4-201ENST00000344722 KMT2DO14686 5537 aa4.17□□□□□ -1.74
SMC4-201ENST00000344722 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
SMC4-201ENST00000344722 KRTAP5-5Q701N2 237 aaPredicted RBP4.07□□□□□ -1.76
SMC4-201ENST00000344722 KRTAP20-1Q3LI63 56 aa4□□□□□ -1.77
SMC4-201ENST00000344722 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
SMC4-201ENST00000344722 LCE1EQ5T753 118 aa3.95□□□□□ -1.78
SMC4-201ENST00000344722 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
SMC4-201ENST00000344722 SSPOA2VEC9 5147 aa3.94□□□□□ -1.78
SMC4-201ENST00000344722 DSTQ03001 7570 aaKnown RBP3.93□□□□□ -1.78
SMC4-201ENST00000344722 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.9□□□□□ -1.79
SMC4-201ENST00000344722 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
SMC4-201ENST00000344722 MUC12Q9UKN1 5478 aa3.73□□□□□ -1.81
SMC4-201ENST00000344722 KRTAP20-2Q3LI61 65 aa3.71□□□□□ -1.82
SMC4-201ENST00000344722 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
SMC4-201ENST00000344722 MACF1Q9UPN3 7388 aaKnown RBP3.63□□□□□ -1.83
SMC4-201ENST00000344722 KRTAP9-9Q9BYP9 154 aa3.52□□□□□ -1.85
SMC4-201ENST00000344722 MUC19Q7Z5P9 8384 aa3.51□□□□□ -1.85
SMC4-201ENST00000344722 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.86
SMC4-201ENST00000344722 NEBP20929 6669 aa3.42□□□□□ -1.86
SMC4-201ENST00000344722 KRTAP5-4Q6L8H1 288 aa3.41□□□□□ -1.86
SMC4-201ENST00000344722 MDN1Q9NU22 5596 aa3.32□□□□□ -1.88
SMC4-201ENST00000344722 KRTAP4-12Q9BQ66 201 aa3.23□□□□□ -1.89
SMC4-201ENST00000344722 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
SMC4-201ENST00000344722 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
SMC4-201ENST00000344722 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
SMC4-201ENST00000344722 KRTAP5-3Q6L8H2 238 aa2.95□□□□□ -1.94
SMC4-201ENST00000344722 MUC5ACP98088 5654 aa2.95□□□□□ -1.94
SMC4-201ENST00000344722 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
SMC4-201ENST00000344722 HMCN1Q96RW7 5635 aa2.75□□□□□ -1.97
SMC4-201ENST00000344722 KRTAP21-1Q3LI58 79 aa2.67□□□□□ -1.98
SMC4-201ENST00000344722 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
SMC4-201ENST00000344722 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
SMC4-201ENST00000344722 KRTAP5-8O75690 187 aa2.56□□□□□ -2
SMC4-201ENST00000344722 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
SMC4-201ENST00000344722 MUC5BQ9HC84 5762 aaPredicted RBP2.52□□□□□ -2.01
SMC4-201ENST00000344722 AHNAK2Q8IVF2 5795 aa2.51□□□□□ -2.01
SMC4-201ENST00000344722 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.4□□□□□ -2.02
SMC4-201ENST00000344722 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
SMC4-201ENST00000344722 AHNAKQ09666 5890 aaKnown RBP2.12□□□□□ -2.07
SMC4-201ENST00000344722 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
SMC4-201ENST00000344722 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 112.1 ms