RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 KRTAP4-9Q9BYQ8 210 aa1.14□□□□□ -2.23
SYNE2-202ENST00000344113 KRTAP19-2Q3LHN2 52 aa1.14□□□□□ -2.23
SYNE2-202ENST00000344113 MDN1Q9NU22 5596 aa1.14□□□□□ -2.23
SYNE2-202ENST00000344113 MT1FP04733 61 aa1.14□□□□□ -2.23
SYNE2-202ENST00000344113 MT2AP02795 61 aa1.12□□□□□ -2.23
SYNE2-202ENST00000344113 KRTAP17-1Q9BYP8 105 aa1.12□□□□□ -2.23
SYNE2-202ENST00000344113 EPPK1P58107 5090 aaKnown RBP1.11□□□□□ -2.23
SYNE2-202ENST00000344113 LOC100996750A0A140TA64 210 aa1.11□□□□□ -2.23
SYNE2-202ENST00000344113 LCE5AQ5TCM9 118 aa1.11□□□□□ -2.23
SYNE2-202ENST00000344113 LCE1DQ5T752 114 aa1.11□□□□□ -2.23
SYNE2-202ENST00000344113 KRTAP6-3Q3LI67 103 aa1.1□□□□□ -2.23
SYNE2-202ENST00000344113 LCE1FQ5T754 118 aa1.1□□□□□ -2.23
SYNE2-202ENST00000344113 ABCA13Q86UQ4 5058 aa1.09□□□□□ -2.23
SYNE2-202ENST00000344113 SYNE1Q8NF91 8797 aaKnown RBP1.09□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP9-6A8MVA2 160 aa1.09□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP9-7A8MTY7 169 aa1.09□□□□□ -2.24
SYNE2-202ENST00000344113 MT1MQ8N339 61 aa1.09□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP9-6A0A140TA67 174 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 SPRR2EP22531 72 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 UBR4Q5T4S7 5183 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP4-8A0A0G2JLE6 195 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP4-8Q9BYQ9 185 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 HMCN2Q8NDA2 5059 aa1.08□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP19-3Q7Z4W3 81 aa1.07□□□□□ -2.24
SYNE2-202ENST00000344113 MT1BP07438 61 aa1.06□□□□□ -2.24
SYNE2-202ENST00000344113 LCE4AQ5TA78 99 aa1.05□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP4-3Q9BYR4 195 aa1.05□□□□□ -2.24
SYNE2-202ENST00000344113 GPR98Q8WXG9 6306 aa1.05□□□□□ -2.24
SYNE2-202ENST00000344113 RNF213Q63HN8 5207 aa1.04□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP9-8Q9BYQ0 159 aa1.03□□□□□ -2.24
SYNE2-202ENST00000344113 KRTAP19-7Q3SYF9 63 aa1.02□□□□□ -2.25
SYNE2-202ENST00000344113 KRTAP9-4Q9BYQ2 154 aa1.01□□□□□ -2.25
SYNE2-202ENST00000344113 KRTAP9-2Q9BYQ4 174 aa1□□□□□ -2.25
SYNE2-202ENST00000344113 KRTAP6-2Q3LI66 62 aa0.99□□□□□ -2.25
SYNE2-202ENST00000344113 FAT4Q6V0I7 4981 aa0.99□□□□□ -2.25
SYNE2-202ENST00000344113 KRTAP9-3Q9BYQ3 159 aa0.99□□□□□ -2.25
SYNE2-202ENST00000344113 OBSCNQ5VST9 7968 aa0.98□□□□□ -2.25
SYNE2-202ENST00000344113 MUC12Q9UKN1 5478 aa0.98□□□□□ -2.25
SYNE2-202ENST00000344113 KRTAP5-5Q701N2 237 aaPredicted RBP0.95□□□□□ -2.26
SYNE2-202ENST00000344113 AHNAK2Q8IVF2 5795 aa0.93□□□□□ -2.26
SYNE2-202ENST00000344113 FCGBPQ9Y6R7 5405 aaPredicted RBP0.93□□□□□ -2.26
SYNE2-202ENST00000344113 MUC5ACP98088 5654 aa0.92□□□□□ -2.26
SYNE2-202ENST00000344113 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
SYNE2-202ENST00000344113 KRTAP4-11Q9BYQ6 195 aa0.9□□□□□ -2.27
SYNE2-202ENST00000344113 KRTAP19-6Q3LI70 58 aa0.88□□□□□ -2.27
SYNE2-202ENST00000344113 LCE1BQ5T7P3 118 aa0.88□□□□□ -2.27
SYNE2-202ENST00000344113 HMCN1Q96RW7 5635 aa0.87□□□□□ -2.27
SYNE2-202ENST00000344113 MT4P47944 62 aa0.87□□□□□ -2.27
SYNE2-202ENST00000344113 MUC2Q02817 5179 aa0.86□□□□□ -2.27
SYNE2-202ENST00000344113 KRTAP6-1Q3LI64 71 aa0.86□□□□□ -2.27
SYNE2-202ENST00000344113 KRTAP9-9Q9BYP9 154 aa0.85□□□□□ -2.27
SYNE2-202ENST00000344113 USH2AO75445 5202 aa0.85□□□□□ -2.27
SYNE2-202ENST00000344113 LCE1CQ5T751 118 aa0.84□□□□□ -2.27
SYNE2-202ENST00000344113 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.27
SYNE2-202ENST00000344113 AHNAKQ09666 5890 aaKnown RBP0.84□□□□□ -2.27
SYNE2-202ENST00000344113 SSPOA2VEC9 5147 aa0.82□□□□□ -2.28
SYNE2-202ENST00000344113 KRTAP20-1Q3LI63 56 aa0.82□□□□□ -2.28
SYNE2-202ENST00000344113 MUC19Q7Z5P9 8384 aa0.77□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP4-4Q9BYR3 166 aa0.76□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.75□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP4-12Q9BQ66 201 aa0.74□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP5-2Q701N4 177 aa0.74□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.73□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP5-4Q6L8H1 288 aa0.73□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP5-1Q6L8H4 278 aa0.72□□□□□ -2.29
SYNE2-202ENST00000344113 KRTAP5-10Q6L8G5 202 aa0.71□□□□□ -2.3
SYNE2-202ENST00000344113 KRTAP5-9P26371 169 aa0.71□□□□□ -2.3
SYNE2-202ENST00000344113 KRTAP4-6Q9BYQ5 205 aa0.71□□□□□ -2.3
SYNE2-202ENST00000344113 KRTAP4-2Q9BYR5 136 aa0.68□□□□□ -2.3
SYNE2-202ENST00000344113 KRTAP20-2Q3LI61 65 aa0.64□□□□□ -2.31
SYNE2-202ENST00000344113 KRTAP5-3Q6L8H2 238 aa0.62□□□□□ -2.31
SYNE2-202ENST00000344113 KRTAP5-11Q6L8G4 156 aa0.6□□□□□ -2.31
SYNE2-202ENST00000344113 KRTAP5-8O75690 187 aa0.59□□□□□ -2.31
SYNE2-202ENST00000344113 KRTAP5-7Q6L8G8 165 aa0.53□□□□□ -2.32
SYNE2-202ENST00000344113 KRTAP21-2Q3LI59 83 aa0.53□□□□□ -2.32
SYNE2-202ENST00000344113 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 10.9 ms