RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 MT2AP02795 61 aa1.19□□□□□ -2.22
SYNE1-201ENST00000341594 KRTAP9-7A8MTY7 169 aa1.19□□□□□ -2.22
SYNE1-201ENST00000341594 MT1HP80294 61 aa1.18□□□□□ -2.22
SYNE1-201ENST00000341594 UBR4Q5T4S7 5183 aa1.18□□□□□ -2.22
SYNE1-201ENST00000341594 LCE3DQ9BYE3 92 aa1.18□□□□□ -2.22
SYNE1-201ENST00000341594 LPAP08519 4548 aa1.17□□□□□ -2.22
SYNE1-201ENST00000341594 LCE1EQ5T753 118 aa1.17□□□□□ -2.22
SYNE1-201ENST00000341594 MACF1Q9UPN3 7388 aaKnown RBP1.16□□□□□ -2.22
SYNE1-201ENST00000341594 KRTAP4-4Q9BYR3 166 aa1.16□□□□□ -2.22
SYNE1-201ENST00000341594 LCE3EQ5T5B0 92 aa1.16□□□□□ -2.22
SYNE1-201ENST00000341594 MT4P47944 62 aa1.15□□□□□ -2.22
SYNE1-201ENST00000341594 FSIP2Q5CZC0 6907 aa1.15□□□□□ -2.22
SYNE1-201ENST00000341594 MT1XP80297 61 aa1.15□□□□□ -2.23
SYNE1-201ENST00000341594 SPRR2FQ96RM1 72 aa1.15□□□□□ -2.23
SYNE1-201ENST00000341594 LCE1AQ5T7P2 110 aa1.14□□□□□ -2.23
SYNE1-201ENST00000341594 MT1MQ8N339 61 aa1.14□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP9-6A8MVA2 160 aa1.14□□□□□ -2.23
SYNE1-201ENST00000341594 SPRR2AP35326 72 aa1.14□□□□□ -2.23
SYNE1-201ENST00000341594 RNF213Q63HN8 5207 aa1.13□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP9-3Q9BYQ3 159 aa1.13□□□□□ -2.23
SYNE1-201ENST00000341594 DSTQ03001 7570 aaKnown RBP1.12□□□□□ -2.23
SYNE1-201ENST00000341594 SPRR2BP35325 72 aa1.12□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP4-12Q9BQ66 201 aa1.11□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP4-2Q9BYR5 136 aa1.11□□□□□ -2.23
SYNE1-201ENST00000341594 MT1BP07438 61 aa1.1□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP4-11Q9BYQ6 195 aa1.1□□□□□ -2.23
SYNE1-201ENST00000341594 KRTAP4-6Q9BYQ5 205 aa1.09□□□□□ -2.23
SYNE1-201ENST00000341594 LCE1FQ5T754 118 aa1.09□□□□□ -2.23
SYNE1-201ENST00000341594 FAT4Q6V0I7 4981 aa1.09□□□□□ -2.23
SYNE1-201ENST00000341594 SPRR2EP22531 72 aa1.06□□□□□ -2.24
SYNE1-201ENST00000341594 LCE1DQ5T752 114 aa1.05□□□□□ -2.24
SYNE1-201ENST00000341594 KRTAP6-3Q3LI67 103 aa1.05□□□□□ -2.24
SYNE1-201ENST00000341594 KRTAP6-2Q3LI66 62 aa1.04□□□□□ -2.24
SYNE1-201ENST00000341594 MDN1Q9NU22 5596 aa1.04□□□□□ -2.24
SYNE1-201ENST00000341594 USH2AO75445 5202 aa1.04□□□□□ -2.24
SYNE1-201ENST00000341594 SYNE1Q8NF91 8797 aaKnown RBP1.03□□□□□ -2.24
SYNE1-201ENST00000341594 KRTAP19-3Q7Z4W3 81 aa1.03□□□□□ -2.24
SYNE1-201ENST00000341594 KRTAP19-7Q3SYF9 63 aa1.02□□□□□ -2.25
SYNE1-201ENST00000341594 OBSCNQ5VST9 7968 aa1.02□□□□□ -2.25
SYNE1-201ENST00000341594 KRTAP9-6A0A140TA67 174 aa1.01□□□□□ -2.25
SYNE1-201ENST00000341594 SPRR2DP22532 72 aa1.01□□□□□ -2.25
SYNE1-201ENST00000341594 NEBP20929 6669 aa1.01□□□□□ -2.25
SYNE1-201ENST00000341594 KRTAP19-6Q3LI70 58 aa1.01□□□□□ -2.25
SYNE1-201ENST00000341594 SSPOA2VEC9 5147 aa1□□□□□ -2.25
SYNE1-201ENST00000341594 MUC12Q9UKN1 5478 aa0.99□□□□□ -2.25
SYNE1-201ENST00000341594 LCE1CQ5T751 118 aa0.99□□□□□ -2.25
SYNE1-201ENST00000341594 KRTAP20-2Q3LI61 65 aa0.98□□□□□ -2.25
SYNE1-201ENST00000341594 KRTAP6-1Q3LI64 71 aa0.98□□□□□ -2.25
SYNE1-201ENST00000341594 GPR98Q8WXG9 6306 aa0.97□□□□□ -2.25
SYNE1-201ENST00000341594 MUC2Q02817 5179 aa0.97□□□□□ -2.25
SYNE1-201ENST00000341594 KRTAP9-9Q9BYP9 154 aa0.94□□□□□ -2.26
SYNE1-201ENST00000341594 KMT2DO14686 5537 aa0.9□□□□□ -2.26
SYNE1-201ENST00000341594 KRTAP5-5Q701N2 237 aaPredicted RBP0.9□□□□□ -2.26
SYNE1-201ENST00000341594 FCGBPQ9Y6R7 5405 aaPredicted RBP0.89□□□□□ -2.27
SYNE1-201ENST00000341594 KRTAP9-2Q9BYQ4 174 aa0.89□□□□□ -2.27
SYNE1-201ENST00000341594 AHNAK2Q8IVF2 5795 aa0.86□□□□□ -2.27
SYNE1-201ENST00000341594 MUC19Q7Z5P9 8384 aa0.86□□□□□ -2.27
SYNE1-201ENST00000341594 KRTAP5-9P26371 169 aa0.83□□□□□ -2.28
SYNE1-201ENST00000341594 HMCN1Q96RW7 5635 aa0.82□□□□□ -2.28
SYNE1-201ENST00000341594 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
SYNE1-201ENST00000341594 KRTAP5-2Q701N4 177 aa0.78□□□□□ -2.28
SYNE1-201ENST00000341594 MUC5ACP98088 5654 aa0.78□□□□□ -2.28
SYNE1-201ENST00000341594 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.77□□□□□ -2.29
SYNE1-201ENST00000341594 KRTAP5-3Q6L8H2 238 aa0.77□□□□□ -2.29
SYNE1-201ENST00000341594 KRTAP5-4Q6L8H1 288 aa0.76□□□□□ -2.29
SYNE1-201ENST00000341594 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
SYNE1-201ENST00000341594 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.71□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP5-1Q6L8H4 278 aa0.71□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP20-1Q3LI63 56 aa0.7□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP21-1Q3LI58 79 aa0.7□□□□□ -2.3
SYNE1-201ENST00000341594 AHNAKQ09666 5890 aaKnown RBP0.69□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP5-8O75690 187 aa0.68□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP5-7Q6L8G8 165 aa0.66□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP5-10Q6L8G5 202 aa0.66□□□□□ -2.3
SYNE1-201ENST00000341594 KRTAP5-11Q6L8G4 156 aa0.63□□□□□ -2.31
SYNE1-201ENST00000341594 KRTAP21-2Q3LI59 83 aa0.56□□□□□ -2.32
SYNE1-201ENST00000341594 PHGR1C9JFL3 82 aa0.51□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 85.1 ms